Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1682
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 109 6e-25
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 109 8e-25
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 109 8e-25
08_01_0951 - 9436319-9436372,9436536-9436622,9436700-9436728,943... 30 0.78
11_01_0355 + 2679561-2680985,2681183-2682295 29 1.4
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 29 1.4
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 29 1.8
10_08_0406 - 17688069-17690643,17691065-17691132 28 3.1
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 4.1
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 27 4.1
02_01_0152 - 1070249-1070296,1070443-1070515,1070601-1070671,107... 27 4.1
01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256... 27 4.1
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 5.5
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310... 27 5.5
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 27 7.2
03_02_0600 - 9748382-9748933,9749805-9749840,9751164-9751218,975... 27 7.2
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 26 9.6
06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699 26 9.6
06_03_0255 - 18839365-18839417,18839605-18839661,18840527-18841070 26 9.6
01_06_1468 + 37574124-37574180,37574275-37574346,37574437-375745... 26 9.6
01_05_0177 - 18968803-18968855,18969053-18969109,18969975-18970518 26 9.6
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 109 bits (263), Expect = 6e-25
Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 2/108 (1%)
Frame = +3
Query: 75 VGRTRLLGKSNYFVKIIQLLGEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMM 254
+ RT+ K Y K+ QLL EY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++
Sbjct: 3 IKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLI 62
Query: 255 RKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKV 392
R+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV
Sbjct: 63 RRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKV 110
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 109 bits (262), Expect = 8e-25
Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 2/108 (1%)
Frame = +3
Query: 75 VGRTRLLGKSNYFVKIIQLLGEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMM 254
+ RT+ K Y K+ QLL EY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++
Sbjct: 3 IKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLI 62
Query: 255 RKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKV 392
R+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV
Sbjct: 63 RRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKV 110
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 109 bits (262), Expect = 8e-25
Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 2/108 (1%)
Frame = +3
Query: 75 VGRTRLLGKSNYFVKIIQLLGEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMM 254
+ RT+ K Y K+ QLL EY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++
Sbjct: 3 IKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLI 62
Query: 255 RKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKV 392
R+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV
Sbjct: 63 RRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKV 110
>08_01_0951 -
9436319-9436372,9436536-9436622,9436700-9436728,
9437447-9438044
Length = 255
Score = 29.9 bits (64), Expect = 0.78
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 57 PHYPGWVGRTRLLGKSNYFVKIIQLLGEYPKCF 155
P YP W+ RTR F++I++ LG++ F
Sbjct: 81 PLYPEWMFRTRFRMHKPLFLRIVEALGQWSPYF 113
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 29.1 bits (62), Expect = 1.4
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Frame = +1
Query: 100 SLTTSLRSSNSWASTQNVSSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTW 279
SLT S S + + + W + A + + S + P ++ S T
Sbjct: 414 SLTCSEASQATHQAAAPTAGWPFVNGAGEAAATTASPTIPPWLRRYQDPDHATPASCGTG 473
Query: 280 TTIQ----PSRNCC---HTSRATLALCSPAETSLRSATNCW 381
IQ P RN HTS TL+ SP+ +S+ T+C+
Sbjct: 474 LQIQDLWNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCY 514
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 395 WNFVLQQFVADLNEVS-AGEHKANVALDVWQQFLEGWIVVQVVFDGFAHH 249
W + Q VA + G H+A+ L W+ + GW + F GFA H
Sbjct: 171 WKYYSGQAVAPYPTIFIGGNHEASNYL--WELYYGGWAAPNIYFLGFAGH 218
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 204 ISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDK 374
I L + L+ + ++ L N AL+KL LPH ++GN+GF+ + + ++ D
Sbjct: 372 IGLLQKLVYLLLSANQLSGSVPRTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDL 431
Query: 375 LLEN 386
+L++
Sbjct: 432 ILDH 435
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 119 DHPTLGRVPKMFHRGCR*RGLATDAA-DPYLATWLQYRAHGKKHNDAQSHQR 271
D P R ++FHR R RG A D A D W+ + ND Q H +
Sbjct: 789 DDPAARRGARLFHR-LRRRGPAFDKAWDELARFWVHLVVYLAPSNDVQGHAK 839
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 141 YPKCFI--VGADNVGSQQMQQIRISLRGSSIV 230
Y KC I VG DN+ Q MQQ R SL I+
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSLETLEIL 1323
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 311 WQQFLEGWIVVQVVFDGFAHHCV 243
W FLEGW V F+G A H V
Sbjct: 356 WSPFLEGWNSPAVQFEGPAVHVV 378
>02_01_0152 -
1070249-1070296,1070443-1070515,1070601-1070671,
1070768-1070874,1071836-1072007
Length = 156
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 240 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLE 383
K T RK HL N AL K+ V +G L+E+ D+L++
Sbjct: 86 KVTGKRKRNAQHLQENSALCKVCTSSNSFVVRCCVKGSLLEINDRLIK 133
>01_01_0316 +
2565704-2566134,2566682-2566845,2566989-2567152,
2567594-2567720,2568347-2568450
Length = 329
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 88 GYLGSLTTSLRSSNSWASTQN-VSSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ 249
G LGS+ + L ++ W +N V W+ I R +C R++ P C++ K +
Sbjct: 234 GLLGSMLSELITN--WTIYENKVHHWIHIGTERVQCQRALFLVPLPELCTYFKVE 286
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 99 KSNYFVKIIQLLGEYPKCF 155
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>03_06_0135 +
31928838-31929698,31929783-31929932,31930795-31931065,
31931157-31931249,31931442-31931616,31931715-31931960,
31932100-31932294,31932604-31932802
Length = 729
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 227 RAHGKKHNDAQSHQRPPGQQSSPRETVA 310
R+H K+H A SH P +SP T A
Sbjct: 103 RSHKKRHPPAGSHPHRPNATASPDSTPA 130
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 207 SLRGSSIVLMGKNT-MMRKAIKDHLDNNPALEKLL 308
SLR +I MG+NT ++ +A+KD+ N ALE LL
Sbjct: 700 SLRHVTIDYMGENTAVIEEALKDY-PNQAALELLL 733
>03_02_0600 -
9748382-9748933,9749805-9749840,9751164-9751218,
9751588-9751697,9751955-9752602
Length = 466
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +3
Query: 183 QQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLV 359
+Q+Q IR +L + +L+ KNT++ KAI + P E L P +KG ++F + V
Sbjct: 74 KQLQGIRDTLPETCRLLVAKNTLVGKAI----EGTP-WEALKPCMKGMNAWLFVHTEEV 127
>12_02_0318 -
17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 93 VALSSLPILDSVA*GLR*NLRTRQNAPRAEF 1
VA SS+P+ DSV ++ N+ T+ P F
Sbjct: 423 VATSSIPVFDSVRLSIKNNIATKDIMPCESF 453
>06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699
Length = 240
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 227 RAHGKKHNDAQSHQRPPGQQSSPR 298
R KKHN ++ H PP +PR
Sbjct: 72 RKKKKKHNKSKHHHTPPPPSPTPR 95
>06_03_0255 - 18839365-18839417,18839605-18839661,18840527-18841070
Length = 217
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 57 PHYPGWVGRTRLLGKSNYFVKIIQLLGEYPKCFIVGADNVGSQQMQQIR 203
P YP + RTR F++I+ LG + F + D G Q + ++
Sbjct: 75 PLYPESMFRTRFRMGRPLFLRIVSALGRWSPYFTLKVDCSGRQGLSPLQ 123
>01_06_1468 +
37574124-37574180,37574275-37574346,37574437-37574513,
37574897-37574978,37576005-37576069,37576313-37576354,
37576452-37576503,37576631-37576679,37576784-37576797,
37576942-37577049,37577129-37577272,37577421-37577810
Length = 383
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 215 WLQYRAHGKKHNDAQSHQRPPGQQSSPRETVA 310
+LQY +H + D SH R P Q P ++
Sbjct: 74 YLQYSSHQELTTDQSSHGRNPDQAFKPSYNIS 105
>01_05_0177 - 18968803-18968855,18969053-18969109,18969975-18970518
Length = 217
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 57 PHYPGWVGRTRLLGKSNYFVKIIQLLGEYPKCFIVGADNVGSQQMQQIR 203
P YP + RTR F++I+ LG + F + D G Q + ++
Sbjct: 75 PLYPESMFRTRFRMGRPLFLRIVSALGRWSPYFTLKVDCSGRQGLSPLQ 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,794,692
Number of Sequences: 37544
Number of extensions: 281140
Number of successful extensions: 837
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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