Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1682
(397 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 0.96
L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein pro... 22 2.2
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 2.2
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 22 2.9
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 22 2.9
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 3.9
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 3.9
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 21 5.1
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 21 5.1
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 21 5.1
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 21 6.8
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 21 6.8
AF388659-2|AAK71994.1| 463|Apis mellifera 1D-myo-inositol-trisp... 21 6.8
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 21 6.8
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 21 6.8
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 20 9.0
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 20 9.0
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 20 9.0
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 20 9.0
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.4 bits (48), Expect = 0.96
Identities = 8/31 (25%), Positives = 13/31 (41%)
Frame = +1
Query: 103 LTTSLRSSNSWASTQNVSSWVPITWARNRCS 195
L L + W S + SW+ + W + S
Sbjct: 75 LLPKLMEFDDWTSVMELHSWMTLMWTDSHLS 105
>L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein
protein.
Length = 81
Score = 22.2 bits (45), Expect = 2.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 346 RVNTKPTLPLMCGNSFSRAGLL 281
R +T P +CG +FSR LL
Sbjct: 37 RTHTLPCKCHLCGKAFSRPWLL 58
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.2 bits (45), Expect = 2.2
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +2
Query: 218 LQYRAHGKKHNDAQSHQRPPGQQSSPRETVATHQGQRWL 334
LQ H + Q H RP QQ ++ Q +R L
Sbjct: 144 LQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRL 182
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.8 bits (44), Expect = 2.9
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 313 CGNSFSRAGLLSRWSLMALRIIVFF-PMSTIL 221
CG + GLLS L+ I V+F P+ I+
Sbjct: 202 CGTDYFNRGLLSASYLVCYGIWVYFVPLFLII 233
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 21.8 bits (44), Expect = 2.9
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 313 CGNSFSRAGLLSRWSLMALRIIVFF-PMSTIL 221
CG + GLLS L+ I V+F P+ I+
Sbjct: 78 CGTDYFNRGLLSASYLVCYGIWVYFVPLFLII 109
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 3.9
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 1 EFGTRCVLSCP 33
EFGT V++CP
Sbjct: 557 EFGTTAVVNCP 567
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 3.9
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 1 EFGTRCVLSCP 33
EFGT V++CP
Sbjct: 557 EFGTTAVVNCP 567
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 21.0 bits (42), Expect = 5.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 374 FVADLNEVSAGEHKANVALDVWQQFLE 294
FVAD+N ++ + V + V Q ++E
Sbjct: 18 FVADINSINVEDMDFRVDMFVRQSWIE 44
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.0 bits (42), Expect = 5.1
Identities = 8/28 (28%), Positives = 13/28 (46%)
Frame = +2
Query: 239 KKHNDAQSHQRPPGQQSSPRETVATHQG 322
++ + A S Q PG ++ HQG
Sbjct: 207 QQQSQAASQQSQPGMHPRQQQQAQQHQG 234
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 21.0 bits (42), Expect = 5.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -2
Query: 264 WLCASLCFFP*ARYWSHV 211
W+C+S FP +W V
Sbjct: 171 WICSSAISFPAIVWWRAV 188
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 20.6 bits (41), Expect = 6.8
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = -1
Query: 103 DFPSSLVLPTHPG*CGVGTSMKFKDKTKRTACR 5
DF + +++ HPG G + T AC+
Sbjct: 339 DFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 371
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 20.6 bits (41), Expect = 6.8
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = -1
Query: 103 DFPSSLVLPTHPG*CGVGTSMKFKDKTKRTACR 5
DF + +++ HPG G + T AC+
Sbjct: 50 DFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 82
>AF388659-2|AAK71994.1| 463|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
Length = 463
Score = 20.6 bits (41), Expect = 6.8
Identities = 5/17 (29%), Positives = 9/17 (52%)
Frame = +1
Query: 118 RSSNSWASTQNVSSWVP 168
+ S+ W +N+ W P
Sbjct: 129 KKSSGWRKLRNIVHWTP 145
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 20.6 bits (41), Expect = 6.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 231 LMGKNTMMRKAIKDHLDNNPALEKLLPH 314
L GK+ + K IK ++N ++ LP+
Sbjct: 110 LGGKHKFISKKIKKTMENKDITKRPLPN 137
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 6.8
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = -1
Query: 103 DFPSSLVLPTHPG*CGVGTSMKFKDKTKRTACR 5
DF + +++ HPG G + T AC+
Sbjct: 339 DFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 371
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.2 bits (40), Expect = 9.0
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2
Query: 62 LSRMGREDKATW 97
L ++G E+KA W
Sbjct: 330 LGKLGEEEKADW 341
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.2 bits (40), Expect = 9.0
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2
Query: 62 LSRMGREDKATW 97
L ++G E+KA W
Sbjct: 330 LGKLGEEEKADW 341
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.2 bits (40), Expect = 9.0
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2
Query: 62 LSRMGREDKATW 97
L ++G E+KA W
Sbjct: 330 LGKLGEEEKADW 341
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 20.2 bits (40), Expect = 9.0
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 181 RNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTT 285
R + SV+R P+S SW K PS+ T
Sbjct: 627 RTTLTCSVTRGDLPLSISWLKDGRAMGPSERVHVT 661
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,950
Number of Sequences: 438
Number of extensions: 2901
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9761793
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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