Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1681
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    29   0.31 
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   2.9  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   3.9  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   6.7  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    24   8.9  
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    24   8.9  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 295 SLARLSDGSKNVLLVFQNFHNHVEPLWRARYV*RARSEFSCI*IFVVL 438
           S    SD +K +  V +N      P WR+    +A SE SC+ ++ +L
Sbjct: 314 SFCSSSDDAKPITFVTKNLRKFPIPEWRSSLEVQAESEQSCLPLYPLL 361



 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 320 LKMFYWYFKIFIITSNLSGARVMFSVRVASSRVYEFL 430
           L  FY+ F+  ++TS L   +  FS+  A+S + + L
Sbjct: 521 LHSFYYTFRSVLVTSLLLSLKPAFSIDFAASWLAKIL 557


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 162 INVFYAAGPQTGVVPGCVPTDRNVRSKCRCSNVSCSSHYDAQLT 31
           +N+F   GP T ++P  +P+D ++ S  +   +  S  YD++ +
Sbjct: 345 MNMFAQNGPNTSLLPTAMPSDVSISSSLQQQPIHPS--YDSRFS 386


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 268 PKTTITNRVSLARLSDGSKNVLLVFQNFHNHVEP 369
           PKT +T  +S +  S  S   +L  QNF+N   P
Sbjct: 577 PKTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHP 610


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 135 QTGVVPGCVPTDRNVRSKCRCSNV 64
           Q  +  G +P D N +S C CS++
Sbjct: 242 QYRLTQGVIPPDPNFQSGCNCSSL 265


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 370 EVRRDYENFEIPIKHF 323
           EV+ +++NFEIP+  F
Sbjct: 353 EVKENFKNFEIPVDTF 368


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 298 LARLSDGSKNVLLVFQNFHNHVEPLWRARYV*RARSEF 411
           L  + + SKN++ + +    H++PL   + +  ARS+F
Sbjct: 233 LTIMLNSSKNIVKIIKLGGTHIQPLLLKKCIEVARSKF 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,366
Number of Sequences: 5004
Number of extensions: 28723
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)