Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1681
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical...    27   4.5  
L23651-10|AAM22041.1|  821|Caenorhabditis elegans Kleisin (abnor...    27   7.9  

>AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical
           protein Y38E10A.4 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 154 FLCSRPSDRSGPWMCPHGP 98
           FLC RP+  S PW+ P  P
Sbjct: 276 FLCKRPAGTSCPWVEPETP 294


>L23651-10|AAM22041.1|  821|Caenorhabditis elegans Kleisin (abnormal
           closure) familyprotein 2 protein.
          Length = 821

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 93  HCGPWGHIQGPLLSEGRLHKKH*SHCVARAAL 188
           H   W     P+L EG   K++  H V RA +
Sbjct: 711 HVDKWHSRMEPILEEGETRKEYDVHAVGRAVI 742


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,250,926
Number of Sequences: 27780
Number of extensions: 173384
Number of successful extensions: 339
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)