Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1678
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    31   1.3  
03_06_0502 - 34384285-34384503,34384595-34384755,34384854-343849...    29   3.1  
09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792     28   7.2  
08_02_0695 + 20122838-20122949,20123238-20123335,20123520-201236...    28   7.2  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     28   9.5  

>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 129  MDFSNARGRAKPLPTAPSRCLPLKITNV*RGLEKTP 22
            +D S  RGRA+P  T PS   P K+ +V   L  TP
Sbjct: 1659 LDSSMFRGRAQPQDTRPSAITPSKLEDVRDALGATP 1694


>03_06_0502 -
           34384285-34384503,34384595-34384755,34384854-34384931,
           34385444-34385595,34385645-34385703,34385808-34385894,
           34385990-34386086,34386232-34386416,34386494-34386553,
           34386640-34386715,34386824-34386924,34387039-34387215,
           34387302-34387399,34387505-34387604
          Length = 549

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 14  IDFGVFSSPRYTLVILSGRQR-LGAVGSGLALPLALLKSMGGGN 142
           I + + S P +   IL G Q  L  +G+ + +P AL+  MGGGN
Sbjct: 23  ISYCLTSPPPWPEAILLGFQHYLVMLGTTVIIPTALVPQMGGGN 66


>09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792
          Length = 264

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -2

Query: 186 ALVGRRAYGPPDGEWLPPPMDFSNARGRAKPLPTAPS 76
           A  G +A G  DG   PPPM+F+    RA P   APS
Sbjct: 63  ASAGGKANGGGDGP--PPPMNFNYDDYRALPRSDAPS 97


>08_02_0695 +
           20122838-20122949,20123238-20123335,20123520-20123696,
           20123790-20123890,20124049-20124124,20124213-20124272,
           20124362-20124546,20124638-20124734,20124817-20124903,
           20124989-20125047,20125157-20125248,20125436-20125513,
           20125617-20125777,20125880-20126098
          Length = 533

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 14  IDFGVFSSPRYTLVILSGRQR-LGAVGSGLALPLALLKSMGGGN 142
           + + + S P +   ++ G Q  +  +G+ + +P AL+  MGGGN
Sbjct: 27  VSYCITSPPPWPEAVILGFQHYIVMLGTSVIIPSALVPQMGGGN 70


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +2

Query: 89  GSGLALPLALLKSMGGGNHSPSGGPYARL 175
           GS LA  L LL  M      PSG  YARL
Sbjct: 64  GSDLASSLRLLADMQAAGLRPSGAAYARL 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,774,683
Number of Sequences: 37544
Number of extensions: 351071
Number of successful extensions: 783
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)