Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1674
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    27   2.4  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    27   2.4  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   5.6  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   9.8  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   9.8  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 349 IPMAIDAADIVNYKQGIIKYCFDSGLNHAVLLVGYGVENNIP 224
           +P+++D  + + Y + ++K C    L   VL+V Y V+   P
Sbjct: 359 VPLSLDLMEKMTYTRAVVKECL--RLRPPVLMVPYRVKKAFP 398


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 119 ARKFVSHTTSVYVLLYPEKSVLSPIRAPSVFKGPIWNVVFNTI 247
           A+    + + VYVL+  +K   SPI A  +   P   V++NT+
Sbjct: 170 AQFLTKYGSKVYVLVRRDKLRASPIMAKRLLANPKVEVLWNTV 212


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -1

Query: 445 NSNKFLVQVKDCYRYIIVYEEKLKDLLR 362
           N+N +   +KDC+R ++    K+K++++
Sbjct: 198 NNNDWSSLMKDCFRDVVNNNRKMKEIIK 225


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 270 FRPLSKQYFIIPCL*LTMSAASMAIGIGP 356
           FR  S ++   PCL +++      I IGP
Sbjct: 18  FRSYSSKFLFFPCLIMSLVFMQWLISIGP 46


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 525 SKPSLKWAAYSW 490
           SKPSLKW A  W
Sbjct: 381 SKPSLKWLATKW 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,620
Number of Sequences: 5004
Number of extensions: 54111
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)