Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1673
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...   120   5e-29
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...   114   4e-27
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.1  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   1.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   1.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   2.6  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   3.5  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    25   3.5  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    24   6.1  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    24   8.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   8.0  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    24   8.0  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  120 bits (290), Expect = 5e-29
 Identities = 58/94 (61%), Positives = 72/94 (76%)
 Frame = -2

Query: 356 KSLPKRNRMDAYNIIKFPLTSEAAMKKIEDTNPLVFIVHTSANKPHIKAAVKKLYDINVA 177
           KS+P  +R+D Y II  P+ SE+AMKKIED N LVF VH  ANK  IK AVKKLY ++  
Sbjct: 48  KSVPHASRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAV 107

Query: 176 KVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 75
           K+NTLIRP+G KKA+V+L+ D DALDVAN+IG +
Sbjct: 108 KINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  114 bits (274), Expect = 4e-27
 Identities = 56/94 (59%), Positives = 69/94 (73%)
 Frame = -2

Query: 356 KSLPKRNRMDAYNIIKFPLTSEAAMKKIEDTNPLVFIVHTSANKPHIKAAVKKLYDINVA 177
           KS+    R+D Y II  P+ SE+AMKKIED N LVF VH  ANK  IK AV+KLY +   
Sbjct: 48  KSVAHAPRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPV 107

Query: 176 KVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 75
           K+NTLIRP+G KKA+V+L+ D DALDVAN+IG +
Sbjct: 108 KINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 102 QCVIISSESYVRFLFTIRPDESVDFSNIY 188
           +C+ I  E +  FL  I+P E+V F  ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 99  VQCVIISSESYVRFL--FTIRPDESVDFSNIYIIEFLDCSLDM 221
           V   I S +S+  FL  +    D+SVD  ++ I+   +CS D+
Sbjct: 45  VVTTITSYQSFANFLVDYCKNQDQSVDIKSLCILGTFNCSADI 87


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 60  IWNSLYDANFVGNVQCVIISSESYVRFLFTIRPDESVDF 176
           +W +++ A FV +   + +S    +RFL  ++P +  DF
Sbjct: 599 LWITVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 66  NSLYDANFVGNVQCVIISSESYVRFLFTIRPD 161
           ++   +NF  NV C I   +S   F   IRPD
Sbjct: 866 HTFISSNFFENVPCYISLEQSLQNFQNDIRPD 897


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 219 MGLVCTCVDNKDQGVGIFNLLHCCFRREREFNDVVGIHAISLRQ 350
           M ++  C+D KD  + +     C  + + EF DV+  + +   Q
Sbjct: 787 MVILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQ 830


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 246 NKDQGVGIFNLLHCCFRRE 302
           N D  +GI +LLHC  + E
Sbjct: 263 NIDDSIGILDLLHCIVQEE 281


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 63  WNSLYDANFVGNVQCVI-ISSESYV 134
           WN   +++++GN+Q  +   SE YV
Sbjct: 257 WNDYGESHYIGNIQGALPAGSEGYV 281


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 247 IKTKGLVSSIFFIAASDVRGNLM 315
           I ++G++SS    AAS VR NLM
Sbjct: 397 IPSEGIISSTPISAASKVRMNLM 419


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 196  SFLTAALIWGLFALVWTIKTKGLVSSIF 279
            + LT++ ++G+F   W++  K L+   F
Sbjct: 1242 ALLTSSRVFGIFMFTWSLVNKMLICPEF 1269


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 78  DANFVGNVQCVIISSESYVRFLFTIRPDESVDFSNIYIIEFLD 206
           D   V N +CV ISS + ++ L   R    ++   + + EF+D
Sbjct: 20  DQPLVDNSECVYISSLALLKMLRHGRHGTPMEVMGLMLGEFVD 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,706
Number of Sequences: 5004
Number of extensions: 23970
Number of successful extensions: 62
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)