Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1673
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...   142   7e-35
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855    142   7e-35
04_03_0500 + 16585157-16585201,16586840-16586978,16587456-165875...    30   0.61 
01_01_0778 + 6024154-6024315,6024725-6024802,6024909-6025071,602...    28   1.9  
01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459...    27   3.3  
05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571           27   4.3  
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644...    26   7.6  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score =  142 bits (344), Expect = 7e-35
 Identities = 68/93 (73%), Positives = 77/93 (82%)
 Frame = -2

Query: 353 SLPKRNRMDAYNIIKFPLTSEAAMKKIEDTNPLVFIVHTSANKPHIKAAVKKLYDINVAK 174
           S P RN++D Y I+K+PLT+E+AMKKIED N LVFIV   A+K  IKAAVKK+YDI   K
Sbjct: 70  STPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKK 129

Query: 173 VNTLIRPDGKKKAYVRLARDYDALDVANKIGII 75
           VNTLIRPDGKKKAYV+L  DYDALDVANKIGII
Sbjct: 130 VNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 162


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score =  142 bits (344), Expect = 7e-35
 Identities = 68/93 (73%), Positives = 77/93 (82%)
 Frame = -2

Query: 353 SLPKRNRMDAYNIIKFPLTSEAAMKKIEDTNPLVFIVHTSANKPHIKAAVKKLYDINVAK 174
           S P RN++D Y I+K+PLT+E+AMKKIED N LVFIV   A+K  IKAAVKK+YDI   K
Sbjct: 60  SAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKK 119

Query: 173 VNTLIRPDGKKKAYVRLARDYDALDVANKIGII 75
           VNTLIRPDGKKKAYV+L  DYDALDVANKIGII
Sbjct: 120 VNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 152


>04_03_0500 +
           16585157-16585201,16586840-16586978,16587456-16587577,
           16588850-16588900,16589289-16589601,16592816-16593162
          Length = 338

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -2

Query: 353 SLPKRNRMDAYNIIKFPLTSEAAMKKIEDTNPLVFIV-HTSANKPHIKAAVKKLYDINVA 177
           +LP++  MD Y  +KF       M+   DTN  +F++ H         A  ++LY +N A
Sbjct: 97  ALPRK--MDLYLDLKFVRNLAWKMQTCYDTNESIFLIRHWLETALAYDAVSRRLYGLN-A 153

Query: 176 KVNTLIRPD 150
           K N   R D
Sbjct: 154 KANFAARED 162


>01_01_0778 +
           6024154-6024315,6024725-6024802,6024909-6025071,
           6025484-6025788,6025897-6025961,6026570-6026763,
           6027233-6027441,6028147-6028325,6029345-6029459,
           6029520-6029558
          Length = 502

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 114 ISSESYVRFLFTIRPDESVDF-SNIYIIEFLDCSLDMGLVCTCVDNKD 254
           IS+    +FL  + P   + F   IY++    CSL MG   T VD+ D
Sbjct: 252 ISTPYNTKFLVPLPPPLGLAFIGKIYLVLAAICSLSMGTGVTLVDHLD 299


>01_07_0022 -
           40543912-40544004,40545060-40545229,40545850-40545971,
           40549272-40550909,40553212-40553720
          Length = 843

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 225 LVCTCVDNKDQGVGIFNLLHCC---FRREREFNDVVGIHAISLRQ 350
           +VC  VD ++ G G    +HC    F    +F  V+ IH + L++
Sbjct: 584 VVCDLVDGRNGGGGGGKCIHCTDLGFLHASKFLRVIDIHGLELKK 628


>05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571
          Length = 527

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 326 AYNIIKFPLTSEAAMKKIEDTNPLVFIV 243
           AY + KFPL + +  K I+D   LV +V
Sbjct: 434 AYQVGKFPLLANSRAKAIDDAEGLVKVV 461


>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
            6448164-6448243,6449045-6449129,6449221-6449312,
            6449388-6449456,6449544-6449580,6449662-6449744,
            6450427-6450873,6450978-6451014,6451101-6451158,
            6451243-6451382,6451610-6451675,6451794-6451908,
            6453261-6453299,6453482-6453543
          Length = 1927

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 281  KKIEDTNPLVFIVHTSANKPHIKAAVKKLYDINVAKVNTLIRPDGKKKA 135
            K  + T+P V +  + A +P + A  KK YD ++ +   L     K+++
Sbjct: 1372 KDDKKTSPKVPVDGSKAKRPRVGAGKKKTYDWDMLRKEVLYSHGNKERS 1420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,274,874
Number of Sequences: 37544
Number of extensions: 142738
Number of successful extensions: 361
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)