Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1673
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...   122   6e-29
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...   122   7e-29
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr...    29   0.95 
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr...    29   0.95 
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr...    29   0.95 
U41532-4|AAK68320.1|  767|Caenorhabditis elegans Hypothetical pr...    28   1.7  
U41532-3|AAK68319.1|  797|Caenorhabditis elegans Hypothetical pr...    28   1.7  
Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifyi...    26   6.7  
U97005-10|AAK72084.1|  646|Caenorhabditis elegans Hypothetical p...    26   8.9  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score =  122 bits (295), Expect = 6e-29
 Identities = 61/94 (64%), Positives = 72/94 (76%)
 Frame = -2

Query: 356 KSLPKRNRMDAYNIIKFPLTSEAAMKKIEDTNPLVFIVHTSANKPHIKAAVKKLYDINVA 177
           KS PK ++MD + II+ PLT+E+AMKKIE+ N LVFIV   ANK  IK AV KLY++   
Sbjct: 54  KSAPKTSKMDHFRIIQHPLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQAL 113

Query: 176 KVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 75
           KVNTLI P  +KKAYVRL  DYDALDVANKIG+I
Sbjct: 114 KVNTLITPLQQKKAYVRLTADYDALDVANKIGVI 147


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score =  122 bits (294), Expect = 7e-29
 Identities = 60/94 (63%), Positives = 72/94 (76%)
 Frame = -2

Query: 356 KSLPKRNRMDAYNIIKFPLTSEAAMKKIEDTNPLVFIVHTSANKPHIKAAVKKLYDINVA 177
           KS P R+++D++ +IK P T+E++MKKIED N LVFIV   ANK HIK AV  LY++   
Sbjct: 53  KSAPARDKLDSFAVIKAPHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAV 112

Query: 176 KVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 75
           KVNTLI P  +KKAYVRLA DYDALDVANKIG I
Sbjct: 113 KVNTLITPLQQKKAYVRLASDYDALDVANKIGFI 146


>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
           protein T14E8.1c protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 75  YDANFVGNVQCVI-ISSESYVRFLFTIRPDESVDFSNIYI 191
           YD   +   Q  + I+ ++YV+   ++RPD  VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735


>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
           protein T14E8.1b protein.
          Length = 1030

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 75  YDANFVGNVQCVI-ISSESYVRFLFTIRPDESVDFSNIYI 191
           YD   +   Q  + I+ ++YV+   ++RPD  VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735


>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
           protein T14E8.1a protein.
          Length = 1086

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 75  YDANFVGNVQCVI-ISSESYVRFLFTIRPDESVDFSNIYI 191
           YD   +   Q  + I+ ++YV+   ++RPD  VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735


>U41532-4|AAK68320.1|  767|Caenorhabditis elegans Hypothetical
           protein F11D5.3b protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 233 ANKPHIKAAVKKLYDINVAKVNTLI 159
           AN PH+   + KLYD  V K N  +
Sbjct: 183 ANSPHLTGGIGKLYDGEVGKNNVFV 207


>U41532-3|AAK68319.1|  797|Caenorhabditis elegans Hypothetical
           protein F11D5.3a protein.
          Length = 797

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 233 ANKPHIKAAVKKLYDINVAKVNTLI 159
           AN PH+   + KLYD  V K N  +
Sbjct: 213 ANSPHLTGGIGKLYDGEVGKNNVFV 237


>Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical
           protein Y48E1B.8 protein.
          Length = 383

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +1

Query: 148 PSGLMRVLTLATFIS*SFLTAALIWGLFALVWTIKTKGLVSSIFFIAASDVRGNLMML*A 327
           P+GL  +L L  F   S +     W L  L+   K++  + ++ ++ A     +L  L  
Sbjct: 4   PAGLQSLLALIFFNRLSLVIFYSFWFLIGLLVLRKSQNALEAVRYVKAHSASVSLDSLEG 63

Query: 328 SMRF--LLGRDF 357
           S  F  LL  DF
Sbjct: 64  STEFRQLLEEDF 75


>U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 1 protein.
          Length = 505

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 90  VGNVQCVIISSESYVRFLFTIRPDESVDFSNIYIIEFLDCSLDMGLVC 233
           V +  CV+     Y  FLF +    ++ + + YI    +C L   +VC
Sbjct: 148 VNHTACVMNLDSVYSSFLFAVETHHTIGYGHRYIT--TECYLAGAIVC 193


>U97005-10|AAK72084.1|  646|Caenorhabditis elegans Hypothetical
           protein F19F10.12 protein.
          Length = 646

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 111 IISSESYVRFLFTIRPDESVDFSNIYIIEFLDC 209
           ++ S SY R +   RPD  +++  ++ IE+ +C
Sbjct: 462 VLCSSSYTRPMIR-RPDMQINYEKVWPIEYDEC 493


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,234,935
Number of Sequences: 27780
Number of extensions: 132770
Number of successful extensions: 432
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)