Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1673
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   0.82 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   2.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   2.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   3.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   4.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.8  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 248 IVHTSANKPHIKAAVKKLYDINVAKVNTLIRP 153
           I+  SA   H     K+LYD  ++  N LIRP
Sbjct: 7   ILILSARICHGNPDAKRLYDDLLSNYNRLIRP 38


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 203 KKLYDINVAKVNTLIRPDG 147
           K+LYD  ++  N LIRP G
Sbjct: 22  KRLYDDLLSNYNRLIRPVG 40


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 203 KKLYDINVAKVNTLIRP 153
           K+LYD  ++  N LIRP
Sbjct: 35  KRLYDDLLSNYNRLIRP 51


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 284 MKKIEDTNPLVFIVH 240
           +K+IEDT P++ I +
Sbjct: 111 LKEIEDTEPILLIAY 125


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 203 KKLYDINVAKVNTLIRP 153
           K+LYD  ++  N L+RP
Sbjct: 30  KRLYDDLLSNYNKLVRP 46


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 203 KKLYDINVAKVNTLIRP 153
           K+LYD  ++  N L+RP
Sbjct: 30  KRLYDDLLSNYNKLVRP 46


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 203 KKLYDINVAKVNTLIRP 153
           K+LYD  ++  N L+RP
Sbjct: 26  KRLYDDLLSNYNKLVRP 42


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 215 KAAVKKLYDINVAKVNTLIRPDGKKKAY 132
           KAAV +L  + + K   +  P GKK  +
Sbjct: 226 KAAVMRLGLMEIIKFVNIFFPGGKKTTF 253


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 223 GLFALVWTIKTKGLVSS 273
           G  A ++T+K KGL+ S
Sbjct: 506 GWTAPIYTLKRKGLIKS 522


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 223 GLFALVWTIKTKGLVSS 273
           G  A ++T+K KGL+ S
Sbjct: 506 GWTAPIYTLKRKGLIKS 522


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 223 GLFALVWTIKTKGLVSS 273
           G  A ++T+K KGL+ S
Sbjct: 506 GWTAPIYTLKRKGLIKS 522


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,024
Number of Sequences: 438
Number of extensions: 1600
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)