Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1670
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   1.4  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   1.9  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   4.4  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   5.8  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   7.6  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   7.6  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 163  ISATIHSLMSWFTTLVPCNSSRSQPLKII 249
            +++T  S  SWFTT VP   +RS  + ++
Sbjct: 1088 VTSTTGSGTSWFTTTVPATGTRSGSVIVV 1116


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 101 KQANKKASKFPWGRKIDTSEVVVTCKIRRPVRS 3
           K  N+ + +FP+  KI       TCK  +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 109  PEVIERVVLLVLNLVDSKISATIHSLMSWFTTLVPCNSSRSQPLKIILVGTT 264
            P++  + +LLV  L ++   A +H +M  FT +     SR     I ++  T
Sbjct: 872  PQIQNKALLLVSALANAAPEAVLHGVMPIFTFMGSTVLSRDDAFSIHVIEQT 923


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 252 KNYFKRLTSARVTWH*CSKP 193
           K Y +RL     TWH C  P
Sbjct: 336 KRYVQRLVRCDYTWHLCKSP 355


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 385 LHHMAFTSGNTTRNKLLQEIKA 320
           +HH  F  G+T R + LQ++ A
Sbjct: 860 VHHFGFAPGSTPRREWLQKLDA 881


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 88  LFACLLEPEVIERVVLLVLNLVDSKISATIHSLMSWFTTLVPCNSS 225
           + AC L+P++   +  L+ N  +  I+A  H L+    TL+P +++
Sbjct: 505 VLACRLDPKIDNTISALLENGNNKVINANCH-LLRELVTLLPASTA 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,855
Number of Sequences: 5004
Number of extensions: 42072
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)