Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1670
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0130 - 20408835-20411771                                         32   0.36 
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643...    29   1.9  
05_02_0109 + 6689176-6689315,6689438-6689561                           29   2.5  
12_02_0977 + 24999211-25000275,25000375-25000521,25000805-25001179     28   5.9  
08_01_0214 - 1710317-1710443,1710839-1711047,1711161-1711420,171...    27   7.7  

>11_06_0130 - 20408835-20411771
          Length = 978

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = -2

Query: 465 LPRCKI*ATKKSSHLTFWLMLPSLTVDFITWHLLAEIQHVTSYCKKLRQVQISSETSI 292
           LP+C + +TKK  H    ++L +LTV  ++   +  + ++   C K R+ ++ + TSI
Sbjct: 715 LPQCSLKSTKKKKH---QILLIALTVCLVSTLAIFSLLYMLLTCHKRRKKEVPAMTSI 769


>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
            34664499-34664647,34664784-34664879,34665406-34665476,
            34665637-34665698,34665778-34665841,34665950-34666034,
            34666129-34666255,34666381-34666454,34666539-34666599,
            34666683-34666771,34666897-34667206,34667763-34667815,
            34668299-34668370,34668648-34668914,34669015-34669047,
            34669163-34669245,34669522-34669594,34669834-34670170,
            34670302-34670633,34670816-34671135,34671261-34671612,
            34671691-34671906
          Length = 1170

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +1

Query: 40   TSDVSIFLPHGNLLAFLFACLLEPEVIERVVLLVLNLVDSKISATIHSLMSWFTTLVPCN 219
            T+++   L +   +A  F C +    I  +V    +L  S+     H+L S + T + C+
Sbjct: 904  TAELEFALRNSEAVANAFGCSIFSSAIHFLVYCSAHLTSSEKEQVEHTLRSSYITSLDCS 963

Query: 220  SSRSQP 237
            ++ S P
Sbjct: 964  NTGSYP 969


>05_02_0109 + 6689176-6689315,6689438-6689561
          Length = 87

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 130 VLLVLNLVDSKISATIHSLMSWFTTLVPC 216
           V LVL      I A +H +M+WFT+ +PC
Sbjct: 60  VTLVLEAAVELIKAPLH-VMTWFTSKIPC 87


>12_02_0977 + 24999211-25000275,25000375-25000521,25000805-25001179
          Length = 528

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 88  LFACLLEPEVIERVVLLVLNLVDSKISATIHSLMSWFTTLVPCNSSRSQPLKI--ILVGT 261
           L+ C+LEP +IER    VL+         IHS M     +V   ++R + L++  I VGT
Sbjct: 249 LYGCVLEPGMIER----VLHPESEIRELAIHSAMGGTIAVVAAAATRLRSLRMFNIQVGT 304


>08_01_0214 -
           1710317-1710443,1710839-1711047,1711161-1711420,
           1711442-1711534,1711745-1711872,1711958-1712151,
           1712288-1712385,1712548-1712658,1712782-1712950,
           1713109-1713181,1713311-1713507
          Length = 552

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 499 CSIRKSCNNVSVTSMQDLSHEEIVTSYVLAHV-AQFDCRLHHMAFTSGNTTRNK 341
           CSI ++ N VSV S++ +      T+  +  V A  D  L  + FTSG T R K
Sbjct: 139 CSISQAANFVSVVSVEQIKRSSGGTTRAVEPVSAPNDVAL--ICFTSGTTGRPK 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,115,957
Number of Sequences: 37544
Number of extensions: 262789
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)