Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1670
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical...    29   3.0  
Z83231-4|CAB05752.1|  356|Caenorhabditis elegans Hypothetical pr...    28   4.0  

>AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical
           protein Y47D3B.3 protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 432 ISSWLRSCIEVTETLLHDLRMLHSRSCGVPLLVFLICIMFF 554
           IS +LR+CI + +  L DL+ L +R   VP   F I + FF
Sbjct: 22  ISKYLRTCISLLDPQLIDLK-LQTRMVPVP-ATFAIIVSFF 60


>Z83231-4|CAB05752.1|  356|Caenorhabditis elegans Hypothetical
           protein F57G9.4 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 348 VTSYCKKLRQVQISSETSIAIMDLS*RVGSSDKNYFKRLTSA 223
           V   C K+ +++I SE ++ I D + ++G+    YF++L  +
Sbjct: 313 VLGRCLKIGRLKIESENAMEIQDSTKKMGTETDLYFQQLADS 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,496,529
Number of Sequences: 27780
Number of extensions: 243119
Number of successful extensions: 703
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)