Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1668
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    29   0.88 
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   8.2  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +1

Query: 295 YIFIYCDKR*YADYVSI*IDMKTNLLNDYFKVLWVLTRVL*QTLSKFTSSPVGVTAGVPT 474
           Y+F  C+    +  + + I     LL+DY    W L + L   +S F    + +TA   T
Sbjct: 491 YLFPLCEPNLQSAMLLVPITYSDALLDDYLCSCWNLWKKLRLPVSAFVFLELTITALYET 550

Query: 475 RLAATSKF 498
           +L+  + F
Sbjct: 551 KLSPAAAF 558


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 61  LFLLTFSGNWLGISLY 14
           LF LTF G+W G S+Y
Sbjct: 369 LFDLTFCGDWAGSSVY 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,135
Number of Sequences: 5004
Number of extensions: 44408
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)