Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1668
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.9  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 171 RTNKEIKNTKKNMATLLFPGVVANALWCAS 260
           R ++ +   K +  TLLF G+V    +CA+
Sbjct: 397 RHSRPVPAKKYDCVTLLFSGIVGFGAYCAA 426


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 424 LSKFTSSPVGVTAGVPT 474
           + +F   PVGVTA +PT
Sbjct: 259 VKRFFGLPVGVTAAIPT 275


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 424 LSKFTSSPVGVTAGVPT 474
           + +F   PVGVTA +PT
Sbjct: 259 VKRFFGLPVGVTAAIPT 275


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 424 LSKFTSSPVGVTAGVPT 474
           + +F   PVGVTA +PT
Sbjct: 259 VKRFFGLPVGVTAAIPT 275


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 171 RTNKEIKNTKKNMATLLFPGVVANALWCAS 260
           R ++ +   K +  TLLF G+V    +CA+
Sbjct: 397 RHSRPVPAKKYDCVTLLFSGIVGFGAYCAA 426


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 288 RSLNYNYTSKMHTIMH 241
           +S  YN+  K+H + H
Sbjct: 239 KSFGYNHVLKLHQVAH 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,294
Number of Sequences: 438
Number of extensions: 3216
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)