Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1666
(343 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 29 0.15
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 27 0.80
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 0.80
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ... 26 1.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 1.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 1.8
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 2.4
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 4.3
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 24 5.6
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 24 5.6
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 24 5.6
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 24 5.6
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 24 7.5
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 24 7.5
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 23 9.8
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 23 9.8
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces... 23 9.8
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 23 9.8
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 29.5 bits (63), Expect = 0.15
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +3
Query: 99 GHNGGQNFAYGGQDFSG-GQGHTIALTQEG-GGHDFSEAQALGGHNLGPQIFGHGAPSGG 272
G GG +GG +G G T G GG F A +++ ++FGH GG
Sbjct: 80 GAEGGPGAGFGGFPGAGPGGARTFHFNMGGPGGAQFFSAS--DPNDIFERVFGHAFAGGG 137
Query: 273 DFGG 284
GG
Sbjct: 138 GMGG 141
Score = 25.4 bits (53), Expect = 2.4
Identities = 23/76 (30%), Positives = 25/76 (32%)
Frame = +3
Query: 57 FEGGYSNEVAGDEQGHNGGQNFAYGGQDFSGGQGHTIALTQEGGGHDFSEAQALGGHNLG 236
FE + + AG G GG GG D GGG A GG G
Sbjct: 125 FERVFGHAFAGG--GGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAG 182
Query: 237 PQIFGHGAPSGGDFGG 284
P H S FGG
Sbjct: 183 P----HARRSHPSFGG 194
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 27.1 bits (57), Expect = 0.80
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 103 WPCSSPATSLEYPPSNPALQVATASSKQMNIF 8
+P SSP S+++ PSNP + + + IF
Sbjct: 181 YPLSSPGISVQFRPSNPNQLIVGERNGNIRIF 212
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 0.80
Identities = 25/72 (34%), Positives = 27/72 (37%)
Frame = +3
Query: 54 GFEGGYSNEVAGDEQGHNGGQNFAYGGQDFSGGQGHTIALTQEGGGHDFSEAQALGGHNL 233
GF GG+ G+ H G F G F GG G GG LGG
Sbjct: 206 GF-GGFGG-FGGEGHHHGGHGGFGGGPGGFEGGPGGF-------GGGPGGFGGGLGGFGG 256
Query: 234 GPQIFGHGAPSG 269
GP FG G P G
Sbjct: 257 GPGGFG-GGPGG 267
Score = 26.6 bits (56), Expect = 1.1
Identities = 20/71 (28%), Positives = 25/71 (35%)
Frame = +3
Query: 129 GGQDFSGGQGHTIALTQEGGGHDFSEAQALGGHNLGPQIFGHGAPSGGDFGGDTYLQAAH 308
GG G H + GH+ GG + GP G G FGG+ + H
Sbjct: 164 GGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGH 223
Query: 309 DSGHQLGQGDF 341
G G G F
Sbjct: 224 -GGFGGGPGGF 233
>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 26.2 bits (55), Expect = 1.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 31 WQLPLARLGSKVDTPTKLLEMSRAIT 108
+ +P+A L +D PT +E+ AIT
Sbjct: 96 YAIPMAVLAKSIDLPTYFVELRHAIT 121
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 1.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -1
Query: 157 PWPPEKSWPPYAKF*PP----LWPCSSPATSLEYPPSNPALQVA 38
P P S PP PP L P + PA ++ PPS P+L A
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSA 193
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 1.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 130 PYAKF*P--PLWPCSSPATSLEYPPSNPALQVATASS 26
PY P P+ S ++S PPSNP +A ASS
Sbjct: 956 PYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASS 992
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 2.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 15 FICLLLAVATCKAGFEGGYSNEVAGDEQGHNG 110
F LLLA+ AG++G Y + GD NG
Sbjct: 110 FAKLLLALVAKLAGYDGHYLFDNIGDNYKDNG 141
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 4.3
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 172 KAIVCPWPPEKSWPPYAKF*PPLWPCSSPATSLEYPPSNPALQVATASSKQMN 14
+A+ P +K+W AK + P +PA E PS P++ + S ++
Sbjct: 274 QAVASSKPIKKAWASVAKSKKKVTPAPAPAPESE--PSKPSIAPSQPSKTNVS 324
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 24.2 bits (50), Expect = 5.6
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 82 LLEMSRAITGVKISHTAAKTFQ-EARDTQ 165
LLE ++T VK +HTA +ARD Q
Sbjct: 119 LLEKCESLTTVKENHTAVSILSLQARDKQ 147
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 24.2 bits (50), Expect = 5.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 108 RYGPAHLQQLRWSIHLRTQPCKWQLP 31
RY P HL+ + L++ P +Q+P
Sbjct: 312 RYPPTHLESGSSAFRLQSSPMGYQMP 337
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 24.2 bits (50), Expect = 5.6
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 48 KAGFEGGYSNEVAGDEQGHNGGQNFAYGGQDFSGG 152
+ GF GG G GG+ A GG+ GG
Sbjct: 18 RGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52
Score = 23.8 bits (49), Expect = 7.5
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 54 GFEGGYSNEVAGDEQGHNGGQNFAYGGQ-DFSGGQG 158
G GG G +G GG+ A GG+ SGG+G
Sbjct: 30 GGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 24.2 bits (50), Expect = 5.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 126 YGGQDFSGGQGHTIALTQEG 185
Y + +GG+ HT+AL ++G
Sbjct: 336 YNVKSITGGEHHTLALLEDG 355
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 23.8 bits (49), Expect = 7.5
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -1
Query: 175 VKAIVCPWPPEKSWPPYA-KF*PPL--WPCSSPATSLEYPP 62
VKA P PP++++PP A PP+ + P YPP
Sbjct: 202 VKAQPPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPP 242
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 23.8 bits (49), Expect = 7.5
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 148 PEKSWPPYAKF*PPLWPCSSPATSLEYPPSNPALQVATASSK 23
P + PP KF PP + PA E PA+Q S +
Sbjct: 447 PTSALPPIGKFAPPTTAKAQPAP--EKRRGEPAVQTRNHSKR 486
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 23.4 bits (48), Expect = 9.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 5 HEDIHLFATGSCH 43
H +HLF T CH
Sbjct: 91 HRPLHLFQTSECH 103
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 90 LQQLRWSIHLRTQPCKWQL 34
LQ+LR + LR PC W L
Sbjct: 74 LQKLRLKMDLRIIPCLWIL 92
>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 382
Score = 23.4 bits (48), Expect = 9.8
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +3
Query: 255 GAPSGGDFGGDTYLQAAHDS-GHQLGQG 335
GAP G G Y+ AAH G LG G
Sbjct: 326 GAPVIGKIGSSIYVAAAHGCWGITLGPG 353
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 23.4 bits (48), Expect = 9.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 178 CVKAIVCPWPPEKSWPPYAKF*PP 107
C +V WPP + P A+ PP
Sbjct: 105 CYMVLVQNWPPHLALAPLAQAEPP 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,463,791
Number of Sequences: 5004
Number of extensions: 27538
Number of successful extensions: 112
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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