Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1666
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   2.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   3.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   7.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   7.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   7.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   9.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   9.5  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 54  GFEGGYSNEVAGDEQGHNGGQ 116
           G++G  SN V G+E  HN G+
Sbjct: 261 GWDG--SNMVEGNESDHNDGR 279


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 191 TSSFLC*GYCVSL 153
           T +F C GYC+ L
Sbjct: 454 TKTFCCKGYCMDL 466


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 274 TLAVTRTFKQHTIQDTNWVKAI 339
           TLA   T  Q ++   ++VKAI
Sbjct: 255 TLATQNTQSQQSLPPVSYVKAI 276


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 234 PDYDHPKLELQKSHD 190
           P+Y  P++ L K HD
Sbjct: 529 PEYVAPEVILNKGHD 543


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 273 DFGGDTYLQAAHDSG 317
           DFG D   QAA  SG
Sbjct: 47  DFGSDERRQAAMQSG 61


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 273 DFGGDTYLQAAHDSG 317
           DFG D   QAA  SG
Sbjct: 41  DFGSDEKRQAAIQSG 55


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 273 DFGGDTYLQAAHDSG 317
           DFG D   QAA  SG
Sbjct: 47  DFGSDEKRQAAIQSG 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,956
Number of Sequences: 438
Number of extensions: 2352
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)