Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1663
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z70037-5|CAA93880.1|  648|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z49069-4|CAA88868.1|  648|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    29   3.8  
AL117193-10|CAB60304.1|  337|Caenorhabditis elegans Hypothetical...    27   8.9  

>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
           protein T22A3.8 protein.
          Length = 3102

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 6   SYHHSKRHQLIRGLYPHIYNLMTNVL 83
           +YH     +  RGL+P+I+NL TN L
Sbjct: 35  NYHEFISSESERGLFPNIFNLATNSL 60


>Z70037-5|CAA93880.1|  648|Caenorhabditis elegans Hypothetical
           protein K12D12.5 protein.
          Length = 648

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 3   RSYHHSKRHQLIRGLYPHIYNLMTNVLKENQWITQRYN*FLSFNIYILKFK 155
           RS +  K H L    Y    N M NV K+N+ I  RY+  + F + +  F+
Sbjct: 401 RSKNIRKLHLLTTSEY--FKNWMENVQKKNELINDRYDVMMEFQLLLQNFE 449


>Z49069-4|CAA88868.1|  648|Caenorhabditis elegans Hypothetical
           protein K12D12.5 protein.
          Length = 648

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 3   RSYHHSKRHQLIRGLYPHIYNLMTNVLKENQWITQRYN*FLSFNIYILKFK 155
           RS +  K H L    Y    N M NV K+N+ I  RY+  + F + +  F+
Sbjct: 401 RSKNIRKLHLLTTSEY--FKNWMENVQKKNELINDRYDVMMEFQLLLQNFE 449


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
           protein T22A3.8 protein.
          Length = 3102

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 6   SYHHSKRHQLIRGLYPHIYNLMTNVL 83
           +YH     +  RGL+P+I+NL TN L
Sbjct: 35  NYHEFISSESERGLFPNIFNLATNSL 60


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3102

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 6   SYHHSKRHQLIRGLYPHIYNLMTNVL 83
           +YH     +  RGL+P+I+NL TN L
Sbjct: 35  NYHEFISSESERGLFPNIFNLATNSL 60


>AL117193-10|CAB60304.1|  337|Caenorhabditis elegans Hypothetical
           protein Y105C5A.17 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -1

Query: 464 NLQFQLIIVEFRLLRNH*YSLKIKLFAYFHINNIHAISYV 345
           NLQF + ++  R L+N   S ++KLF    + + + +S++
Sbjct: 87  NLQFHVCVLIGRFLKNCLVSKRLKLFILIQMFDCYVVSFL 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,048
Number of Sequences: 27780
Number of extensions: 270043
Number of successful extensions: 581
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)