Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1662
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024493-2|AAB70323.1|  322|Caenorhabditis elegans Hypothetical ...    28   4.3  
U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeas...    27   7.5  
DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar prot...    27   7.5  

>AF024493-2|AAB70323.1|  322|Caenorhabditis elegans Hypothetical
           protein F23F1.5 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 354 CLY-NATSESLDFLILLNVHTAIERPYDLANALRQGALDSSSQL 226
           C+Y N T   LD L+  N H  +E PYD    + +  L+ + +L
Sbjct: 172 CIYSNQTYYVLD-LLSWNAHEYVESPYDFRQFMLKSKLEEAPEL 214


>U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 35 protein.
          Length = 821

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 10  AQTEALTAELYISVRLKRSIKNMQSCKHYLAVRIIIE 120
           AQ EALT E+Y+   L   ++ + SC+  ++   ++E
Sbjct: 244 AQLEALTEEMYVKDVLPSILEQIVSCRDPISQEYLME 280


>DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar protein
           sorting factor protein.
          Length = 826

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 10  AQTEALTAELYISVRLKRSIKNMQSCKHYLAVRIIIE 120
           AQ EALT E+Y+   L   ++ + SC+  ++   ++E
Sbjct: 249 AQLEALTEEMYVKDVLPSILEQIVSCRDPISQEYLME 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,805,277
Number of Sequences: 27780
Number of extensions: 148929
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)