Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1660
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    28   1.5  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.6  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    26   4.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   4.5  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.9  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   7.9  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/43 (20%), Positives = 26/43 (60%)
 Frame = -3

Query: 488  LCNPNLKDYKKHYKVLNLLLSNLPFQYEHMVQYKLFWDYVINI 360
            L +  + +Y++   + NL+  +LPF  + + +  +++D+ +N+
Sbjct: 1130 LADDVINEYRRKAILCNLMALSLPFTQDKLFKANVYFDFAMNL 1172


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +3

Query: 144 RRH-SSLHVSRYDY--PYDSYGQSDCT-TIMQYIDNTYTAQALKKFLNILLYYGYKCLDK 311
           R H +S+  SRY +  PYD   + D T +   YI  TYTA   ++ L+       K LD+
Sbjct: 259 RTHDNSIWASRYAHFPPYDK--KKDTTRSAADYIPYTYTALTKEEILHASHPRACKLLDQ 316

Query: 312 QKMCHHNETNCTMMRH 359
                  ET   + RH
Sbjct: 317 ITKIMVEETAFLLSRH 332


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 267 FLNILLYYGYKCLDKQKMCHHNETNCTMMR 356
           FL+ L YY Y+C+ K   C   E+   + R
Sbjct: 457 FLSSLQYYAYECVIKPSYCKLRESLTELYR 486


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 213 TTIMQYIDNTYTAQALKKFLNILLYYGYKCLDKQKM 320
           TTI Q++ +T    A  KFL +L  Y  K LDK ++
Sbjct: 416 TTIRQHLPDTL---AFHKFLELLHLYREKLLDKTEL 448


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 528 IRTRMPPFCFIFKPV*SKFKRL*ETL*SSQFATFKPSFPIR 406
           IR  M  FC + K   +K   L E + +  FAT  P  P++
Sbjct: 439 IRDVMSDFCGVLKKQTTKSNSLPEVVQTKPFATSTPDTPLK 479


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 210 CTTIMQY-IDNTYTAQALKKFLNILLYYGYKCLD 308
           CT   QY + ++ T   L+KF   +    YKCLD
Sbjct: 77  CTDSYQYPLKHSCTPSFLRKFNESIENVSYKCLD 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,573
Number of Sequences: 5004
Number of extensions: 65228
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)