Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1660
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    29   3.5  
03_02_0090 - 5564326-5567280                                           28   8.1  

>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 210 CTTIMQYIDNTYTAQALKKFLNILLYYGYKCLDKQKMCHHNETNCTMMRHDVDYVI 377
           C     +IDN   +  LKK L I+  +GY  +D +K+  HN  +  + R+ + YV+
Sbjct: 300 CRLTRAFIDNA-CSMVLKKSLTIM-EHGYAVIDLEKLDPHNVDDLFLSRY-LAYVL 352


>03_02_0090 - 5564326-5567280
          Length = 984

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = +1

Query: 196 MGRATVLQSCSILIIPTQRKP*RSS*IFYYITVINA*TSKKCVI 327
           +G+ T+L++ +   +PT R+P  SS +F +  V+ A  SK+C I
Sbjct: 198 VGKTTLLRAINNSFLPTARQPPASSKVFDH--VVWAVASKECRI 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,115,581
Number of Sequences: 37544
Number of extensions: 402216
Number of successful extensions: 1019
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)