Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1660
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81531-2|CAB04316.1|  422|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF273800-1|AAG15149.1|  272|Caenorhabditis elegans nuclear recep...    29   4.2  
AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z68316-1|CAA92680.1|  213|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    27   9.6  
AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical
           protein T22H2.2 protein.
          Length = 527

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 388 LYWTMCSYWKGRFESSKLRTL*CFL*SFKFGLHRFKYKTKWRHTCPYLRRSRLKLA 555
           ++W + SYWK  +E +KL  +   L S    +  F+   KW     YL+ +  KLA
Sbjct: 284 IHWPIYSYWKLTYEGNKLLLVAALLCSIFLAVLVFETVEKW-----YLKLTSTKLA 334


>Z81531-2|CAB04316.1|  422|Caenorhabditis elegans Hypothetical
           protein F36D3.2 protein.
          Length = 422

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 258 LKKFLNILLYYGYKCLDKQKMCHHNETNCTMMRHDVDY 371
           L+++      +G KC D+Q + H ++       +DVDY
Sbjct: 244 LERYTMTAQVFGQKCYDEQILLHSHQDAARFTDYDVDY 281


>AF273800-1|AAG15149.1|  272|Caenorhabditis elegans nuclear receptor
           NHR-54 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 258 LKKFLNILLYYGYKCLDKQKMCHHNETNCTMMRHDVDY 371
           L+++      +G KC D+Q + H ++       +DVDY
Sbjct: 94  LERYTMTAQVFGQKCYDEQILLHSHQDAARFTDYDVDY 131


>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 56  INATLDPQGVHPTPSPGCHPAHSTYYKHI 142
           + A+  P   HP+  P  HPA+  Y+ HI
Sbjct: 535 MGASPSPHHPHPSQFPPNHPANPMYHHHI 563


>Z68316-1|CAA92680.1|  213|Caenorhabditis elegans Hypothetical
           protein K08E4.2 protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 395 QYKLFWDYVINIMPHHGAI-RFVV 327
           QY LFW++V N+M   G I  FVV
Sbjct: 31  QYLLFWEHVCNVMCSWGTIFSFVV 54


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 398 VQYKLFWDYVINIMPHHGAIRFVVMTHFLLV*AFIT 291
           +++   WDY++  MPH     F +M   ++V  F+T
Sbjct: 273 IKWSSRWDYILQSMPHTNIQWFSIMNSLVIV-LFLT 307


>AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical
           protein F02E11.2 protein.
          Length = 514

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 457 NTIKFSICYFQTFLSNTSTWSNINYSGIT*STSCLIMVQ 341
           NT    +C+F  F    S + N N+  +  S  CL+ V+
Sbjct: 87  NTFLLFLCFFFGFFGFFSNFKNENFQRLPPSVRCLVAVK 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,776,619
Number of Sequences: 27780
Number of extensions: 371872
Number of successful extensions: 981
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)