Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1658
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 29 0.25
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 1.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 2.3
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 25 4.1
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 4.1
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 5.4
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 24 7.1
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 24 7.1
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 24 7.1
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 24 9.4
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 24 9.4
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 29.1 bits (62), Expect = 0.25
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 204 GQNEKQWTSPQTRHFGSSRST-NGAFRYLKHRSSFSSKPSLATKGSTSKLTLRHNPLS 34
G++ P+ +G+SR+ + YL+ R S + + SL+ STS+ T + LS
Sbjct: 257 GESRNLMVDPKVSPYGNSRTPLRDSSNYLRDRRSINRQSSLSIPKSTSETTRKTLALS 314
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.6 bits (56), Expect = 1.3
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = -2
Query: 282 LVGELTGLKPDDVASTNPSKSVIRSCGQNEKQWTSPQTRHFGSSRSTNGAFRYLKH-RSS 106
+ ++ G+ P+ + + S + FG R+ N A L+H RS+
Sbjct: 637 IASDIDGVPKKSTLGAPPAAHTSAQMQRMSNSFASQTKQVFGEQRTENSARESLRHSRSN 696
Query: 105 FSSKPS--LATKGST 67
S PS L+ + ST
Sbjct: 697 MSRSPSPMLSRRSST 711
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 173 KHVISDPPDPLTVLLGTSSTGH 108
+H++ +PP PLTVL GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 4.1
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -2
Query: 243 ASTNPSKSV-IRSCGQNEKQWTSPQTRHFGSS----RSTNGAFRYLKHRSSFSSKPSLAT 79
A++ P S ++S Q PQT+ S+ + N ++ SFS KPS+A
Sbjct: 210 AASRPKVSFSLQSSRQPSIAEEQPQTQRKSSAITVEHAENAEPETPRNNVSFSRKPSIAE 269
Query: 78 KGSTSKLTLRHNPL 37
+ S+ +T+ N +
Sbjct: 270 QDSSQDITMPPNEI 283
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 4.1
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = -2
Query: 261 LKPDDVASTNPSKSVIRSCGQNEKQWTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLA 82
LKP +S + + S I S + T P+T F SS + + + + + +S + KP +
Sbjct: 928 LKPSLTSSVSTASSYIASSASSNTLSTEPKT--FSSSSTLSESISSI-NTNSLTVKPESS 984
Query: 81 TKGSTS 64
ST+
Sbjct: 985 LSSSTT 990
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 24.6 bits (51), Expect = 5.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 8 PTGIGSARKLNGLCLRVNLLVEPFVASDG 94
P+G S K++ +CL+ ++ FV G
Sbjct: 94 PSGTSSIEKVSSICLKNDIQTSSFVLPSG 122
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 24.2 bits (50), Expect = 7.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 120 KHRSSFSSKPSLATKGSTSKLTLRHNPLS 34
K+R S SKP + T K++ +H+P+S
Sbjct: 46 KNRKS-KSKPKVTITSDTPKVSSQHSPVS 73
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 24.2 bits (50), Expect = 7.1
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = -2
Query: 258 KPDDVASTNPSKSVIRSCGQNEKQWTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLAT 79
KP + N +KS + + S + SRS+ A +L+ RSS SS
Sbjct: 155 KPKASIALNTTKSEATRSSLSSSSFDSYLRPNVSRSRSSGNAPPFLRSRSS-SSYSINKK 213
Query: 78 KGSTSKLTLRH 46
KG++ RH
Sbjct: 214 KGTSGGQATRH 224
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 24.2 bits (50), Expect = 7.1
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -2
Query: 264 GLKPDDVASTNPSKSVIRSCGQNEKQWTSPQTRHFGSSRS 145
GL PD V S+N R + Q + P GSS S
Sbjct: 104 GLTPDLVGSSNALNKPTRESDSLKHQKSHPMLNSLGSSLS 143
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 23 SARKLNGLCLRVNLLVEPFVASDGFDENDDRC 118
S R++ L R ++ V PF+ + +D ND+ C
Sbjct: 137 SIRQIEYLNRRYDVSV-PFILMNSYDTNDETC 167
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 23.8 bits (49), Expect = 9.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 180 SPQTRHFGSSRSTNGAFRYLKHRSSF 103
SP T++ GS+ +T + L+ SSF
Sbjct: 89 SPSTQNVGSTNNTRASQSLLRRSSSF 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,393,132
Number of Sequences: 5004
Number of extensions: 23026
Number of successful extensions: 73
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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