Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1658
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0475 + 29610268-29610711 31 0.41
11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223 29 0.95
03_04_0204 - 18444903-18445054,18445445-18445676,18445765-184458... 27 3.8
07_03_1290 + 25537973-25538962 27 5.1
06_03_0823 - 25026949-25027551,25027635-25027742,25027994-250281... 27 6.7
02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844... 27 6.7
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 26 8.9
02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149 26 8.9
>01_06_0475 + 29610268-29610711
Length = 147
Score = 30.7 bits (66), Expect = 0.41
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = -2
Query: 267 TGLKPDDVASTNPSKSVIRSCGQNEKQWTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPS 88
T P ++S+ PS+S R+ + SP T H + + A+R L + SS +
Sbjct: 49 TSSSPSPMSSSPPSRSSTRATLTHSPSSASPDTNH-ADHVAVSCAYRRL---ALLSSSRA 104
Query: 87 LATKGSTSKLTLRHNPLSFLAEP 19
G+ L+L H+ + L++P
Sbjct: 105 ATHPGTNVALSLIHDAYAILSDP 127
>11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223
Length = 220
Score = 29.5 bits (63), Expect = 0.95
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = -2
Query: 267 TGLKPDDVASTNPSKSVIRSCGQNEKQWTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPS 88
TG P + S V NE +W +P H+G++ + F + + KPS
Sbjct: 127 TGDAPGWTQAPRHSVGVSTWASANEDRWHAPHDIHWGTTNPPDQVFANINNMMDSERKPS 186
Query: 87 L 85
L
Sbjct: 187 L 187
>03_04_0204 -
18444903-18445054,18445445-18445676,18445765-18445836,
18446201-18446347,18446559-18446614,18446727-18446832,
18446938-18447025,18447112-18447230,18448975-18449580,
18449803-18449898,18450232-18450422,18453287-18453416,
18453531-18453566
Length = 676
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = -2
Query: 198 NEKQWTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATKGSTSK 61
N +QW G+ + ++L H + S+P L + G+ +K
Sbjct: 69 NHEQWQGSVKNEIGNQENQQQEQKHLHHSNEQPSRPELVSGGADNK 114
>07_03_1290 + 25537973-25538962
Length = 329
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = -2
Query: 234 NPSKSVIRSCGQNEKQWTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATKGSTSKLT 55
+P S++R CG ++W F S ++ G + L++ S++
Sbjct: 185 SPRTSMMRGCGSGSRKWRLKDLFLFRS--ASEGRATGAGSKDPLLKYTMLSSSASSAAAA 242
Query: 54 LRHNP 40
L HNP
Sbjct: 243 LHHNP 247
>06_03_0823 -
25026949-25027551,25027635-25027742,25027994-25028107,
25028200-25028309,25028432-25028520,25028637-25028833,
25028961-25029122,25029255-25029373,25029488-25029541,
25029687-25029769,25029894-25029982,25030105-25030257,
25030373-25030465,25032070-25032136,25032238-25032350,
25033466-25033561,25034415-25034594
Length = 809
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 243 ASTNPSKSVIRSCGQNEKQWTSPQTRHFGSSRSTNGAFR 127
AS ++ SCGQ+ K ++ FG +R GA++
Sbjct: 725 ASAEVGDTITLSCGQHSKTISAINVTSFGVARGQCGAYK 763
>02_05_0311 +
27782110-27782326,27784121-27784268,27784394-27784478,
27784555-27784650,27785666-27785731,27785900-27785998,
27786145-27786258,27786468-27786578,27786672-27786734,
27786816-27786908,27787960-27788073,27788440-27788505,
27788782-27788994,27789086-27789116,27789459-27791587
Length = 1214
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 156 SSRSTNGAFRYLKHRSSFSS 97
+ R TNG +LKHRS +SS
Sbjct: 450 AKRKTNGKLIHLKHRSLYSS 469
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 356 GPPLEFFFFLT*ADSLERLYQRN 288
G PL + F+ AD L+RL +RN
Sbjct: 1117 GDPLSSYLFILVADVLQRLLERN 1139
>02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149
Length = 272
Score = 26.2 bits (55), Expect = 8.9
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -2
Query: 195 EKQWTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATKGSTSKLTLRHNPLSFLAEPI 16
+ +W +P H+G SRS++ R SS +++G+ KLT R L A I
Sbjct: 197 DSRWQAPHDTHWGHSRSSSSISMPPFSRMWSSS----SSRGNLGKLTRRMGTLELQAGEI 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,535,339
Number of Sequences: 37544
Number of extensions: 161554
Number of successful extensions: 461
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -