Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1658
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    36   0.010
AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical ...    27   3.4  
U29380-8|AAP68925.1|  334|Caenorhabditis elegans Mediator protei...    27   4.5  
AC024876-10|AAP31418.1|  193|Caenorhabditis elegans Hypothetical...    27   6.0  
AC024876-9|AAF60887.2|  301|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ...    27   6.0  
U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signaloso...    26   7.9  
U64842-8|AAB37085.1|  173|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
           protein C32E12.4 protein.
          Length = 1553

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
 Frame = -2

Query: 252 DDVASTNPSKSVIRSCGQNEKQWT---SPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLA 82
           D  ASTN + SVIRS G +   +T   S  T  +GS+   N +       +S+ +  S+ 
Sbjct: 8   DPFASTNRASSVIRSGGLSNSDYTPRISSYTSRYGSTDQLNSSSSSSYRPTSYRA-GSIT 66

Query: 81  TKGSTSKLTLRHNPLSFLAEPIPVG 7
           + G++S  T  + P +  A  + +G
Sbjct: 67  SGGNSSNSTSSYTPRNVRAGSVSIG 91


>AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical
           protein F37E3.2 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 225 KSVIRSCGQNEKQWTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKP-SLATKGSTSKLTLR 49
           KS +  C + +  W   Q   +      +G +   + RSS SSKP    +K ST+ L L 
Sbjct: 463 KSGLGYC-KEQYDWMLEQMEVYRELEKNSGCYSLRRLRSSLSSKPVPKISKNSTNSLILS 521

Query: 48  -HNPLSFLAEPIPV 10
             + LS  A  IP+
Sbjct: 522 IPHDLSSPAFHIPI 535


>U29380-8|AAP68925.1|  334|Caenorhabditis elegans Mediator protein 4
           protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 225 KSVIRSCGQNEKQWTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATK 76
           + V+R    NEKQW +P     G S +T+    Y +   S SS P++  K
Sbjct: 242 QQVLRGATPNEKQWQNP-----GVSGATSTQSPYNRVSQSPSSSPNVKLK 286


>AC024876-10|AAP31418.1|  193|Caenorhabditis elegans Hypothetical
           protein Y94H6A.9b protein.
          Length = 193

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = -2

Query: 255 PDDVASTNPSKSVIRSCGQNEKQWTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATK 76
           P  +    P K +     ++ +++ +P+ + FG S    G         S SS    AT 
Sbjct: 21  PPSLVQQYPGKEIDFKVNRHHEEYVAPKMKPFGGSGVRLGNVVPTVLGQSSSS----ATT 76

Query: 75  GSTSKLTLRHNP 40
             TS  T  HNP
Sbjct: 77  AGTSSATTDHNP 88


>AC024876-9|AAF60887.2|  301|Caenorhabditis elegans Hypothetical
           protein Y94H6A.9a protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = -2

Query: 255 PDDVASTNPSKSVIRSCGQNEKQWTSPQTRHFGSSRSTNGAFRYLKHRSSFSSKPSLATK 76
           P  +    P K +     ++ +++ +P+ + FG S    G         S SS    AT 
Sbjct: 129 PPSLVQQYPGKEIDFKVNRHHEEYVAPKMKPFGGSGVRLGNVVPTVLGQSSSS----ATT 184

Query: 75  GSTSKLTLRHNP 40
             TS  T  HNP
Sbjct: 185 AGTSSATTDHNP 196


>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
           protein C07H6.3 protein.
          Length = 1378

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -2

Query: 243 ASTNPSKSVIRSCGQNEKQWTSPQTRHFGSSRSTNGAFRYL---KHRSSFSSKPSLAT 79
           +ST+ S S +RS G  + Q T+P      S      +  Y     +  S SS PS +T
Sbjct: 664 SSTSTSFSAVRSSGYGQNQSTTPNRAKTPSDGFAGSSPHYTNGNNNNKSSSSSPSTST 721


>U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 2 protein.
          Length = 495

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 127 VPQAPVIVLVETVACDEGLDEQINPQT*PIEFPR 26
           V Q  VI L+     D+GL+ +IN ++  IE P+
Sbjct: 380 VSQKEVIHLLVDAILDDGLEAKINEESGMIEMPK 413


>U64842-8|AAB37085.1|  173|Caenorhabditis elegans Hypothetical
           protein F25B4.9 protein.
          Length = 173

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 195 EKQWTSPQTRHFGSSRSTNGAFRYLKHRS 109
           EK+     + + GS+ S NG FR+++HRS
Sbjct: 146 EKKAAYSASSYSGSNNSVNG-FRFMRHRS 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,777,188
Number of Sequences: 27780
Number of extensions: 130204
Number of successful extensions: 334
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)