Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1655
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   1.2  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    27   3.6  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    26   4.7  

>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 554 ILFMITVFIIFRNIKFYLIF 613
           + F  T+FII+R +++Y+IF
Sbjct: 148 LFFGFTIFIIYRELRYYVIF 167


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 333 RFNGHHTA*I*KKLSTILYPICKFFMNCVNKN 428
           R NG++   I K+L  ++Y +  FF+NC+  N
Sbjct: 401 RLNGNNRMHI-KQLIKVVYNLKSFFLNCLETN 431


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 280 AFRIKFLNIILSFMPISIGLMGTILHEYKKNYQLYY 387
           A+R + LN   S++   +  +  I  +++KNYQ+++
Sbjct: 80  AYRFQILNHTPSYIDNELEWLDEIAEDFQKNYQVWH 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,560
Number of Sequences: 5004
Number of extensions: 54908
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)