Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1655
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC087079-5|ABC48240.1|  367|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC087079-4|ABC48239.1|  370|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical
           protein F56H9.1 protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 557 LFMITVFIIFRNIKFYLIFTEKYCNEHFYFIAYFLNIG 670
           LFM   F+ +    FY++ T K  +       YFL IG
Sbjct: 27  LFMFFKFLSYEKTSFYILCTSKTLSNFILLTVYFLYIG 64


>AC087079-5|ABC48240.1|  367|Caenorhabditis elegans Hypothetical
           protein Y37E3.5b protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 7/16 (43%), Positives = 15/16 (93%)
 Frame = +3

Query: 300 QYNIIIYAHFNRFNGH 347
           Q+ I++++HFN++NG+
Sbjct: 156 QHKIVLFSHFNKYNGY 171


>AC087079-4|ABC48239.1|  370|Caenorhabditis elegans Hypothetical
           protein Y37E3.5a protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 7/16 (43%), Positives = 15/16 (93%)
 Frame = +3

Query: 300 QYNIIIYAHFNRFNGH 347
           Q+ I++++HFN++NG+
Sbjct: 156 QHKIVLFSHFNKYNGY 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,862,814
Number of Sequences: 27780
Number of extensions: 296587
Number of successful extensions: 700
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)