Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1653
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    29   0.44 
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    28   0.77 
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.1  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   4.1  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    25   7.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    24   9.5  

>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 24  SRSTDGAFRYLKHRSPFPSNPSLATKGSTSKLTLRHSP 137
           S S+ G       +  FPS+PS++ K  TS+L+ +  P
Sbjct: 617 SSSSKGVSNAASSKQSFPSSPSISKKLETSRLSTKKLP 654


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +3

Query: 18  GSSRSTDGAFRYLKHRSP----FPSNPSLATKGSTSKLTLRHSPLRFSP-DLLSGSRFRS 182
           G   S +G+F    HRSP    +PS+  L    +      R +P++ +P D+ S   FR 
Sbjct: 159 GEGESDEGSFNTQHHRSPIFQAYPSSEDLVGDPNDPYRRTRRAPIKTNPHDIPSQFIFRK 218

Query: 183 GG 188
            G
Sbjct: 219 LG 220


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +3

Query: 69  PFPSNPSLATKGSTSKLTLRHSPLRFSPDLLSGSRFRSGGRFCEARL 209
           P PS+ S     S S +    +P   SP LLSGS   S       RL
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPSPSLLSGSLANSSEHSSSPRL 519


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 57  KHRSPFPSNPSLATKGSTSK 116
           KH  P PSN +LA  G  S+
Sbjct: 395 KHSGPLPSNIALAVAGGASR 414


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 78  SNPSLATKGSTSKLTLRHSPLRFSPDLLSGSRFRSGGRFCEARLLL 215
           S+ +L T+ +TS+    H         L+G+     GRFC A  L+
Sbjct: 135 SDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 4   KHVIWDPPDPLTVLLGTSSTGH 69
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,556
Number of Sequences: 5004
Number of extensions: 21569
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)