Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1653
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702...    28   3.1  
11_06_0073 + 19817084-19817388,19817777-19818023                       27   9.3  
01_06_0475 + 29610268-29610711                                         27   9.3  

>02_05_0235 - 27068516-27069032,27069697-27069788,27070056-27070289,
            27071569-27071676,27071796-27071855,27072368-27072443,
            27072550-27072710,27076919-27076981,27077061-27077148,
            27077568-27078308,27078406-27079033,27079314-27079368,
            27082073-27083527
          Length = 1425

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
 Frame = +3

Query: 24   SRSTDGAFRYLKHRSPFP-----SNPSLATKGSTSKLTLRHSPLRFSPDLLSGSRFRSG- 185
            +R  D   R   HR P P     +N +     ST    + HSP R       GSR++ G 
Sbjct: 885  TRRLDEGKRKQTHRLPLPPLSICNNSTFLPNNSTPTSPISHSPGRVENPTSPGSRWKKGK 944

Query: 186  --GRFCEARLLLGF 221
              GR     + +GF
Sbjct: 945  LVGRGTFGHVYIGF 958


>11_06_0073 + 19817084-19817388,19817777-19818023
          Length = 183

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 41  CF*VPQAPVTVPVEPVAC 94
           C+ VPQA + V + PVAC
Sbjct: 120 CYKVPQADMAVQLSPVAC 137


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 66  SPFPSNPSLATKGSTSKLTLRHSPLRFSPD 155
           SP P + S  ++ ST + TL HSP   SPD
Sbjct: 52  SPSPMSSSPPSRSST-RATLTHSPSSASPD 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,674,760
Number of Sequences: 37544
Number of extensions: 149706
Number of successful extensions: 329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)