Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1653
         (454 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   6.7  
EF588499-1|ABQ96734.1|  177|Anopheles gambiae transposase protein.     22   8.8  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 212 ARVRVSNVVRFEPREL 259
           AR+ V+N+ +FE REL
Sbjct: 794 ARIGVANIRQFEEREL 809


>EF588499-1|ABQ96734.1|  177|Anopheles gambiae transposase protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 51  YLKHRSPFPSNPSLATKGSTSKLTLRHSPLRFSPDL 158
           YLK + P P   ++  +  TS +  + S   F+ ++
Sbjct: 55  YLKQKQPIPQTINIDDEAGTSAVNFQPSNQYFNSNM 90


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 360,678
Number of Sequences: 2352
Number of extensions: 5827
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38694201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)