Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1652
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   2.7  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   2.7  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    25   4.7  

>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 265  RLNVKKKSLISKLHHWFDWLYVNYI 339
            R   +++SL+++L  +F W+YVN +
Sbjct: 979  RCEKEQQSLLAELDDFFYWIYVNLL 1003


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 121 SSDSLPCVID*ITCILRYSRKIVQSMKHLNSK 26
           +SDS P +ID +  + + +R  V+  KHL  K
Sbjct: 237 ASDSFPMIIDNLKQLKKETRDNVEETKHLLEK 268


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 310 WFDWLYVNYIT 342
           W +W+Y NY+T
Sbjct: 58  WIEWIYKNYVT 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,445
Number of Sequences: 5004
Number of extensions: 24367
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)