Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1652
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427     28   3.5  
08_02_0775 + 21070898-21071290,21071406-21071504,21075103-210751...    27   8.0  

>01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427
          Length = 474

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 244 NK*TLCNELLQCY*SFYLKGYSV*VI---LIFTMLIYRTRSHYRSSDSLPCVI 95
           N+  LC++ LQC   F  K   V V+   L+  +++++  + Y + D LP  I
Sbjct: 225 NRVRLCSQSLQCVLLFLSKAEEVAVVDAPLLQRLVLWKISTSYDTDDELPVKI 277


>08_02_0775 +
           21070898-21071290,21071406-21071504,21075103-21075126,
           21076344-21076391,21076536-21076788,21076945-21077055,
           21077544-21077680,21077778-21077891,21077982-21078181,
           21078268-21078516,21078730-21078886
          Length = 594

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 247 KRLVYFRLNVKKKSLISKLHHWFDWLYVNYI 339
           K+++   L  KK S  +K+H W+D+ +V  I
Sbjct: 383 KKMMVEILENKKVSFWNKIHLWYDFFFVGKI 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,362,158
Number of Sequences: 37544
Number of extensions: 119080
Number of successful extensions: 217
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)