Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1652
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83109-6|CAB05522.1|  362|Caenorhabditis elegans Hypothetical pr...    31   0.34 
Z83106-2|CAB05494.1|  321|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z83109-6|CAB05522.1|  362|Caenorhabditis elegans Hypothetical
           protein F44G3.11 protein.
          Length = 362

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 178 RNILLDKNFSNIVAVRYRAFIYCKRLVYFRLNVKKKSL---ISKLHHWF 315
           RNIL   +   I+ ++Y   IYC  ++Y ++  K K L   I  LH  F
Sbjct: 221 RNILCTISLFCIMLIQYTIIIYCATIMYLKMEEKLKLLSVSIRNLHRQF 269


>Z83106-2|CAB05494.1|  321|Caenorhabditis elegans Hypothetical
           protein F22B8.3 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 178 RNILLDKNFSNIVAVRYRAFIYCKRLVYFRLNVKKKSL---ISKLHHWF 315
           RNI    +   I+ ++Y   IYC  ++Y ++  K K L   I  LH  F
Sbjct: 205 RNISCTISLFCIMLIQYTIIIYCATIMYLKMEEKLKLLSFAIRNLHRQF 253


>Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical
           protein T23D5.6 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 178 RNILLDKNFSNIVAVRYRAFIYCKRLVYFRLNVKKKSLIS 297
           RN++   N + I+ V+Y   IYC   +Y  +  +K S++S
Sbjct: 201 RNVMCTFNMAFIMIVQYGVMIYCGSRLYAEME-EKLSMLS 239


>AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical
           protein K09D9.11 protein.
          Length = 861

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 262 FRLNVKKKSLISKLHHWFDWLYVNYITLRY 351
           FR+NV +K  +S  H W +    N +T R+
Sbjct: 626 FRMNVPQKFPVSSFHIWIEERTDNLLTNRF 655


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,821,464
Number of Sequences: 27780
Number of extensions: 125987
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)