Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1648
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0133 + 15100049-15101836,15103344-15103382                       32   0.41 
02_04_0001 - 18816492-18816741,18816881-18817050,18817244-188173...    29   3.9  
07_01_0504 + 3756714-3757054,3757205-3757259,3757403-3757477,375...    28   6.7  
02_05_0314 + 27818077-27818809,27818839-27818906,27819345-278195...    28   6.7  
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565...    28   6.7  

>10_08_0133 + 15100049-15101836,15103344-15103382
          Length = 608

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 35  FRASWISARCQQVGEASAFLQRRSPRAYFEYAF 133
           FR      RC+ VGE     +RR PR Y +Y +
Sbjct: 72  FRVESYGERCEHVGEEDGLDRRRFPRGYVDYLY 104


>02_04_0001 -
           18816492-18816741,18816881-18817050,18817244-18817388,
           18817495-18817565,18817910-18817993,18818103-18818222,
           18818310-18818480,18818955-18819044,18821893-18821985,
           18822073-18822405
          Length = 508

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = +3

Query: 18  ATGDPGSGHRGSLRGANKLARRARSFKDDLLERISNMRSPAQQHHQPHLSSAVRYVYIIV 197
           A   PG G RG+ R ++  A   R  K  + E  S+   P  +   P      +    + 
Sbjct: 67  AREQPGDGGRGADRSSSAAAAVDRKGKKKIGEDSSSPAPPDDREQAPRKEGRKKSDSPMK 126

Query: 198 FLGSCIMVLHAF 233
           FL S I+ +H +
Sbjct: 127 FLRSSILAIHGY 138


>07_01_0504 +
           3756714-3757054,3757205-3757259,3757403-3757477,
           3757638-3757729,3757914-3757995,3758138-3758221,
           3758326-3758445
          Length = 282

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 448 DILYRFINIVNW*DQA--RFTGRADLCIYFDPNARKPGTGLPARSI*RFPE 594
           D+ YR +N+V W       F  +AD+  Y+D     P       ++ R PE
Sbjct: 110 DLSYRPVNVVCWKRAICLEFMAKADVLEYYDQTVSSPSGSFYIPAVLRVPE 160


>02_05_0314 +
           27818077-27818809,27818839-27818906,27819345-27819528,
           27819700-27819800,27820479-27820586,27820728-27820946
          Length = 470

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 67  TSWRGERVPSKTISSSVFRICVHRLSSTISRIFH 168
           TS++ + V   +  SSV +IC H LSS ++  +H
Sbjct: 51  TSYQIDDVDQYSPISSVAKICTHPLSSHVNHCYH 84


>01_05_0251 +
           19952882-19955459,19956209-19956245,19956370-19956586,
           19957063-19957221,19957397-19957516,19957609-19957719
          Length = 1073

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 140 SAAPSAASFISCSVCLYYSIFRFLYYGIACI 232
           SA P   S ++C +CL+Y +  F+ YG+  +
Sbjct: 888 SAMPYIYSLLNCLICLWYGL-PFVSYGVVLV 917


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,196,374
Number of Sequences: 37544
Number of extensions: 389792
Number of successful extensions: 910
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)