Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1646
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   1.3  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   4.1  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    24   5.4  
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    24   7.1  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    23   9.4  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    23   9.4  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    23   9.4  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    23   9.4  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 322  YGNSVINSLGLIITDHVLGKNE 257
            YGNS+ N L  +  D   GKNE
Sbjct: 2667 YGNSITNDLSRLCADVKSGKNE 2688


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -2

Query: 287 HHGSCSGKKRTQQWNSGLEQH-GPLQGQHGKPQGQRGKLQEPQRHNEHR--GFRH 132
           H GS +GK   +Q +S LE+                 K+   QR+ EHR   FRH
Sbjct: 675 HGGSITGKSIVEQASSPLERRMDAFDENRAFTLDDIPKVISEQRNREHRPNAFRH 729


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3

Query: 172  RSHNGIMSTVAFVMAYDATGRKLPQQMSSGP 80
            RSH G  S    VM +  TGRKL  Q+  GP
Sbjct: 1049 RSH-GFQSRGFEVMYHGHTGRKLVAQVFLGP 1078


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -3

Query: 313 SVINSLGLIITDHVLGK--NELSNGI 242
           SV+ SLG+ +TD  L K  NEL + I
Sbjct: 33  SVLRSLGINVTDAELAKLSNELGDAI 58


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = -3

Query: 181 VSYRSHNGIMSTVAFVMAYDATGRKLPQQMSSGPVPPEDQLGTT 50
           V+Y     +M  V F M YD    ++  ++    +   D  G T
Sbjct: 266 VNYLQQTSLMRCVMFTMNYDLQTFEVVSELLQSAICMNDSFGQT 309


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 191 GQRGKLQEPQRHNEHRGFRHGV 126
           GQ   ++ P+R N+H+GF + V
Sbjct: 781 GQVESVRIPKRFNQHKGFGYVV 802


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 144 WLSSWRTMLLGGNCPSR*V-VDRFRQKTSLGQRHKCAQYY*FGKHFDCF 1
           WLSS+ + ++GG+ P   + ++ F    SL        Y+ FG  F CF
Sbjct: 483 WLSSFPSAIIGGSIPFLVILIELFSILDSLWFH---PLYFMFGFSFFCF 528


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 50  RCPKLVFWRNRS 85
           +CPK ++W N+S
Sbjct: 177 QCPKYLYWNNKS 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,281,691
Number of Sequences: 5004
Number of extensions: 19989
Number of successful extensions: 50
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)