Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1646
(336 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0893 - 32766994-32768841,32769596-32769782,32769860-327699... 28 2.2
09_04_0524 + 18321110-18323978,18324098-18324576 27 2.9
05_05_0065 - 22069798-22069890,22070878-22071160,22071240-220713... 27 2.9
06_03_0535 + 21897912-21898064,21898151-21898246,21898362-218984... 27 3.8
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 27 3.8
02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448 27 3.8
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 27 5.0
01_06_1435 + 37351653-37351990,37352241-37352424 27 5.0
12_02_0268 + 16610502-16611215 26 6.6
04_03_0513 - 16681227-16683936,16685572-16685966 26 6.6
01_07_0385 - 43212580-43213142,43213234-43213612 26 6.6
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 26 8.7
08_01_0211 - 1675189-1675439,1675520-1675784,1675903-1675982,167... 26 8.7
>01_06_0893 - 32766994-32768841,32769596-32769782,32769860-32769987,
32770080-32770283,32770373-32770523,32771424-32771533,
32772534-32772903,32773031-32773189,32773719-32773848,
32773921-32773989,32774066-32774154,32774319-32774439,
32775878-32776148
Length = 1278
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 230 QHGPLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCYWEETAPADE*WTGSARRPAW-D 54
++G L G+ G GQ GK + N +G + + W++ +P + G A +W D
Sbjct: 1026 RNGQLPGKQGFMFGQ-GKSEAIDNWNPWKGDSNANKYMWKDDSPYHQMTKGDAHTQSWRD 1084
Query: 53 NA 48
N+
Sbjct: 1085 NS 1086
>09_04_0524 + 18321110-18323978,18324098-18324576
Length = 1115
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 124 DATGRKLPQQMSSGPVPPEDQLGTTPQMRTVLLIWK 17
+ T L Q SGP+PP QLG +++T LL+W+
Sbjct: 278 ELTSLYLYQNSLSGPIPP--QLGRLAKLQT-LLLWQ 310
>05_05_0065 -
22069798-22069890,22070878-22071160,22071240-22071335,
22071456-22071558,22071633-22071693,22071816-22071887,
22072315-22072383,22072459-22072482,22073278-22073316,
22073862-22073951,22074063-22074095
Length = 320
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 233 EQHGPLQGQHGKPQGQRGKLQEPQRHNEHRGFRH 132
E H L G HG P +R + Q RH+E H
Sbjct: 275 EFHKLLNGNHGDPTDRRQRAQMNGRHDEDINHAH 308
>06_03_0535 +
21897912-21898064,21898151-21898246,21898362-21898474,
21898590-21898656,21898741-21898833,21898968-21899111,
21899693-21899781,21899910-21900015,21900119-21900206,
21900304-21900422,21900913-21901247,21901824-21901933,
21902070-21902179,21902303-21902413,21902870-21903174,
21903267-21903375
Length = 715
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 116 WEETAPADE*WTGSARRPAWDNATNAHSTI-NLENILIA 3
++ AP DE G R+P W + TN H I E L+A
Sbjct: 307 YDYDAPIDE--YGLLRQPKWGHLTNLHKAIKQAETALVA 343
>06_03_0191 -
17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +1
Query: 28 IVLCAFVALSQAGLLAEPVHYSSAGAVSS 114
I LC F++ SQ LLA PV SSA V S
Sbjct: 354 ITLCLFLSWSQ--LLATPVELSSAAQVHS 380
>02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448
Length = 495
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 239 GLEQHGPLQGQHGKPQGQRGKLQEPQRHNEH 147
G+EQH QG+ G QG+R ++P++H H
Sbjct: 422 GIEQH---QGKLGVDQGKRPAPEKPRQHWPH 449
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -2
Query: 299 SGADHHGSCSGKKRTQQWNSGLEQHGPLQGQHGKPQGQRGKLQEPQRHNEHRG 141
+ ADH S +R+ S +HG H +RG Q+H+ HRG
Sbjct: 76 NSADHAASRGRGRRSGDATSASSRHGGGHADHAVRDVRRGGNVSTQQHH-HRG 127
>01_06_1435 + 37351653-37351990,37352241-37352424
Length = 173
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 215 QGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCY 117
+G GKP+G+ + P +EHR F G+ Y
Sbjct: 90 RGGGGKPRGEERRRGVPWSEDEHRLFLEGLDRY 122
>12_02_0268 + 16610502-16611215
Length = 237
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 290 DHHGSCSGKKRTQQWNSGLEQHGPLQGQ 207
DH G+C+ T+QW + + P GQ
Sbjct: 140 DHKGTCAFDMDTEQWEMVHDTNLPFDGQ 167
>04_03_0513 - 16681227-16683936,16685572-16685966
Length = 1034
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 6 NQNVFQINSTVRICGVVPSWSSGGTGPLLIC 98
N V I+ R+ GV+P +SSG L+C
Sbjct: 326 NLRVVDISYNFRLSGVLPDFSSGSALTELLC 356
>01_07_0385 - 43212580-43213142,43213234-43213612
Length = 313
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 194 QGQRGKLQEPQRHNEHRGFRHG 129
Q +RG+ Q+ +RH+ H G RHG
Sbjct: 162 QHRRGRRQDVRRHHAHTG-RHG 182
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 92 HLLGQFPPSSIVRHDESHG 148
H G+FPP+ + +H HG
Sbjct: 111 HAAGEFPPAMLQQHPHYHG 129
>08_01_0211 -
1675189-1675439,1675520-1675784,1675903-1675982,
1676992-1677799
Length = 467
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 9 QNVFQINSTVRICGVVPSWSSGGTGPLLICWGSFLPVAS 125
Q + +T CGVV GG G LL+ S PV S
Sbjct: 105 QEILAFVATGPHCGVVDGGGGGGAGALLLRVSSPGPVGS 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,057,672
Number of Sequences: 37544
Number of extensions: 160421
Number of successful extensions: 626
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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