Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1646
         (336 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    36   0.005
AF098997-6|AAC68716.1|  410|Caenorhabditis elegans Hypothetical ...    28   1.9  
AC006807-1|AAK84615.1|  130|Caenorhabditis elegans Hypothetical ...    28   1.9  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   4.4  
U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical pr...    26   7.7  
Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical pr...    26   7.7  

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 21/56 (37%), Positives = 23/56 (41%)
 Frame = -2

Query: 296 GADHHGSCSGKKRTQQWNSGLEQHGPLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 129
           G   HGSCSG  R +  + G   HG   G  G   G  G          HRG RHG
Sbjct: 287 GHGRHGSCSGSPRGRHGHGGHGGHGSRSGSPGGRHGHGGS-------GHHRGGRHG 335



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
 Frame = -2

Query: 284 HGSCSGKKRTQQWNSGLEQHGP-----LQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVR 123
           HG    +  + + +    +HGP       G HG P       + P RH  H    HG R
Sbjct: 366 HGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCR 424



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/52 (34%), Positives = 20/52 (38%)
 Frame = -2

Query: 284 HGSCSGKKRTQQWNSGLEQHGPLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 129
           HGS SG    +  + G   HG   G  G   G  G          HRG RHG
Sbjct: 242 HGSRSGSPGGRHGHGGHGGHGSRSGSPGGRHGHGGS-------GHHRGGRHG 286


>AF098997-6|AAC68716.1|  410|Caenorhabditis elegans Hypothetical
           protein T10D4.3 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 236 LEQHGPLQGQHGKPQGQRGKLQEPQRHN 153
           ++ +GP   + GKP G    L  P RHN
Sbjct: 227 MDYYGPWPNEWGKPTGPISPLYGPTRHN 254


>AC006807-1|AAK84615.1|  130|Caenorhabditis elegans Hypothetical
           protein Y58A7A.1 protein.
          Length = 130

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 157 IMSTVAFVMAYDATGRKLPQQMSSGPVPPEDQLGTTPQM 41
           +M T+ F   Y    RK   Q+   P+ PED+L  +PQ+
Sbjct: 37  LMETLRFFRDY----RKAQTQLHQPPISPEDRLKRSPQL 71


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
 Frame = -2

Query: 293 ADHHGSCSGKKRTQQWNSGLEQHGPLQGQHGKPQGQRGKLQE-PQRHNEHRGFRHG 129
           A HH       R    + G        G+HG   G  G+    P  H  H    HG
Sbjct: 393 AAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHG 448



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
 Frame = -2

Query: 287 HHGSCSGKKRTQQWNSGLEQHGPLQ----GQHGKPQGQRGKLQEPQRHNEHRGFRHG 129
           HHGS          + G   H P      G+HG   G  G+      H+ H G  HG
Sbjct: 493 HHGSHHSP--AHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHG-EHG 546


>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 233 EQHGPLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCY 117
           EQH      +G PQ Q+ + Q+PQ+  +   F+   + Y
Sbjct: 25  EQHQQFNNFNGFPQFQQQQFQQPQQFQQQPQFQQQQQNY 63


>Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical
           protein F29C12.1b protein.
          Length = 590

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 254 QQWNSGLEQHGPLQGQHGKPQGQRGKLQEPQRHNEHR 144
           QQ+N   +Q  P Q Q+ + Q    + Q+PQ+ ++ +
Sbjct: 359 QQYNQQQQQQTPQQNQYNQQQQYGQQPQQPQQPHQQQ 395


>Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical
           protein F29C12.1a protein.
          Length = 592

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 254 QQWNSGLEQHGPLQGQHGKPQGQRGKLQEPQRHNEHR 144
           QQ+N   +Q  P Q Q+ + Q    + Q+PQ+ ++ +
Sbjct: 361 QQYNQQQQQQTPQQNQYNQQQQYGQQPQQPQQPHQQQ 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,264,646
Number of Sequences: 27780
Number of extensions: 122817
Number of successful extensions: 388
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)