Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1645
         (740 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2G1H8 Cluster: Leucine Rich Repeat family protein; n=1...    34   4.2  
UniRef50_Q5KMQ5 Cluster: Putative uncharacterized protein; n=1; ...    33   9.7  

>UniRef50_A2G1H8 Cluster: Leucine Rich Repeat family protein; n=1;
           Trichomonas vaginalis G3|Rep: Leucine Rich Repeat family
           protein - Trichomonas vaginalis G3
          Length = 693

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
 Frame = -2

Query: 475 DCNSLRFKILQLGFNFILMYSLTNLNMLRCLETSNLFE*RHATIES-KAKNKLSMVPCRA 299
           D NS+   I +L  +  L+  + N+N L+ LET N+   R   +E+ +  NKLS +    
Sbjct: 66  DLNSI-LNIKELDLSNNLISKIENINQLKSLETLNVSSNRIEVLENVEQLNKLSKIIAPE 124

Query: 298 SSVSTLNVFILENHSTYSGYVSIS-NP---FNSHLMF-----TVITECFLS 173
           + + T  VFI +N      Y+ +S NP   FN H +F      ++  C+L+
Sbjct: 125 NRIHT--VFI-KNPLPALEYLDLSFNPISEFNYHQIFPNLKTLILNNCYLT 172


>UniRef50_Q5KMQ5 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 282

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +1

Query: 625 NTLPVAVLLYPRPF*PAPTPSSIIFHSSQNARPP 726
           N+ P + LL P P  P P PS    HSSQ  RPP
Sbjct: 241 NSRPPSHLLPPTPS-PIPAPSLSTLHSSQGIRPP 273


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,680,228
Number of Sequences: 1657284
Number of extensions: 14698278
Number of successful extensions: 29774
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29761
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)