Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1644
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    27   2.0  
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom...    27   3.6  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   8.2  

>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 24/64 (37%), Positives = 27/64 (42%)
 Frame = -1

Query: 714 LQDFCIDSRPRSSCRSNVPHEPTELRRLTCKSGIVEIEGCLCVYGPRERTPHSPFKRASL 535
           L  F ID    SS R N+  E  E +   C S    I GCL  YG      H+ FK   L
Sbjct: 128 LSTFTIDIS--SSWRQNII-ENNEQKEFECTS--TAITGCLLNYGATYNYDHTLFKDNGL 182

Query: 534 Y*ET 523
             ET
Sbjct: 183 SCET 186


>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 163

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 718 VTSGFLYRFEAQVVV*VKRSSRTHGAPTANLQK 620
           V S +  RFE +VV    R S+  G PTAN+ +
Sbjct: 18  VQSPYPIRFEGKVVHGFGRGSKELGIPTANISE 50


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 52  IQTRLHGLDCSISLDTVFTQQGYFKP 129
           + T L  LDC IS   + +Q GY +P
Sbjct: 701 VTTVLGTLDCLISFARISSQSGYTRP 726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,626
Number of Sequences: 5004
Number of extensions: 68306
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)