Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1644
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0157 + 1109499-1111022                                           29   3.7  
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    29   4.9  
07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371           28   6.5  

>07_01_0157 + 1109499-1111022
          Length = 507

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +3

Query: 87  LSRHCFHTTRVLQAIFKAMV*EVIVVLCIRFKKGTSRKYMLW*SPYPCVFSVKMVVSDRL 266
           + +HC HT   L+ +   M+   +   C R   GT+   M+W S +   +   + VS  +
Sbjct: 381 VDQHCLHTNIALEQMEGIMLPRAVD--CFRQNAGTTVYQMVWKSKHGGAYLQAVKVSKNM 438

Query: 267 ISARVI 284
           +  R I
Sbjct: 439 LRQRTI 444


>08_01_0461 -
           4063614-4064375,4064439-4066017,4066041-4066086,
           4066416-4066933,4067435-4067694,4068089-4068594,
           4068667-4071319
          Length = 2107

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 498 ISCFYGRAES-PSTGLHA*KASVVFAHAARTHIDTLQSLQ-SRFCRLAVG 641
           +SC Y   +  PS      KAS VF H  RT +  L+S   SR C +A G
Sbjct: 203 MSCMYYLLQRYPSKFTELDKASTVFKHVVRTILTVLKSSAFSRDCLVASG 252


>07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371
          Length = 722

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 648 TELRRLTCKSGIVEIEGCLCV 586
           T   R  CKS +VE+EG LCV
Sbjct: 604 TRHNRSPCKSFVVELEGMLCV 624


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,778,197
Number of Sequences: 37544
Number of extensions: 456851
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)