Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1644
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 245 LHAEHTGVRGLPQHIFSR 192
           +H  + G+R LP+ IF+R
Sbjct: 290 IHLAYNGLRDLPKGIFTR 307


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 403 AQQLQDHSWRCPLYPMVR 350
           ++ L  ++W  P YPM+R
Sbjct: 336 SKHLLQNTWLDPEYPMIR 353


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 77  IAASLSTLFSHNKGTSSHFQGNGLRSNSSFMH*IQKRHI*KIYVVVIPLPLCV 235
           I +SLS    HN    ++   N    N++  +  +K +    Y+  IP+P+ V
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPV 133


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 272 RNKPITHDHLHAEHTG 225
           RN  + H H H +H G
Sbjct: 14  RNGGVEHPHQHQQHYG 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,218
Number of Sequences: 438
Number of extensions: 5361
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)