Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1643
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    28   1.2  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    28   1.6  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    27   2.1  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 143 SSTILQTIAYPQQLPLISQVTSNVRTHGPQYYSNSLPVPQQEEIVQE 283
           S+T L T  +   L L   +TS+       ++SNS P+P   +I +E
Sbjct: 258 SNTPLSTFRHSSPLSLSPVITSDNDVANSLFFSNSTPLPSSLKIKKE 304


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 282 NVNSLKNQTLLKKSP*MI*MTFKLIQFPMDFH-GQTSYPQFCKHFSS 419
           +V SLKN+ LLK +P    + FKL+ F    H    SY +  +HF +
Sbjct: 125 SVFSLKNERLLKYNP----LNFKLLIFDEVHHMASPSYLRILEHFGA 167


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 431 TGPNKSDTLDTESSAPSP 484
           T PN S TL T+S+AP+P
Sbjct: 261 TSPNTSSTLITQSAAPTP 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,107
Number of Sequences: 5004
Number of extensions: 67316
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)