Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1643
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324...    29   2.9  
08_01_0538 - 4670159-4670251,4670332-4670393,4670476-4670599,467...    29   5.0  
06_01_0900 + 6926600-6927202                                           29   5.0  
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850           28   8.7  

>05_01_0412 -
           3248405-3248458,3248533-3248637,3248950-3249078,
           3249279-3249353,3249520-3249624,3249714-3249767,
           3249970-3250370,3250583-3250694,3250886-3251086,
           3251844-3251972
          Length = 454

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 551 DGIDKVDNGSSPMQGYIGCHSVVG 622
           D ID+  +GS  ++G++ CHS+ G
Sbjct: 120 DMIDREADGSDSLEGFVLCHSIAG 143


>08_01_0538 -
           4670159-4670251,4670332-4670393,4670476-4670599,
           4670797-4670859,4671483-4671533,4671627-4671691,
           4671797-4671935,4672332-4672388,4672729-4672827,
           4673266-4673337,4673426-4673494,4673617-4673762,
           4673881-4674157
          Length = 438

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 592 GVYWLSFCRRYSVQKIPTRSP 654
           GVYW+SF   Y+ +K P   P
Sbjct: 295 GVYWISFGEEYAEKKFPASRP 315


>06_01_0900 + 6926600-6927202
          Length = 200

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 496 HRYGSKNSDRSSRWWS-GYRWH*QSRQWIFTNAGVYWLSFCRRY 624
           HR G    +R  RWW  G     + R+W    AG  W +F RR+
Sbjct: 53  HRVGGGGGERR-RWWRRGVDALMKVREWSELVAGPRWKTFIRRF 95


>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 439 QQKRHLGHRIISSVSLDSLHRYGSKNSDRSSRWW 540
           +Q RH+   II S+S DS  ++  +      RWW
Sbjct: 190 KQSRHILDTIIESLSKDSRRKFLWEEMSYLERWW 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,066,893
Number of Sequences: 37544
Number of extensions: 452408
Number of successful extensions: 1173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)