Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1643
         (728 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    27   0.45 
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         25   3.2  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   7.3  

>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
           protein.
          Length = 3325

 Score = 27.5 bits (58), Expect = 0.45
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 191 ISQVTSNVRTHGPQYYSNSLPVPQQE 268
           IS+ TS + +H P+  SNSLP+PQ E
Sbjct: 415 ISEETSALPSH-PRRRSNSLPIPQIE 439


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 152 ILQTIAYPQQLPLISQVTSNVRTHGPQYYSNSLPVPQQEE 271
           IL  +  P   P +  + S+V    PQ+  N     QQEE
Sbjct: 65  ILNLLGLPGPRPAVRHLHSSVGKSAPQFLLNVYDQLQQEE 104


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 347 ECHLDHLGR 321
           ECHLDH GR
Sbjct: 328 ECHLDHNGR 336


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 796,642
Number of Sequences: 2352
Number of extensions: 16455
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)