Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1643
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY428645-1|AAR27937.1|  892|Caenorhabditis elegans microsomal tr...    29   2.6  
AF045645-4|AAC02607.3|  892|Caenorhabditis elegans Defecation su...    29   2.6  
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z32682-6|CAA83614.1|  200|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AY428645-1|AAR27937.1|  892|Caenorhabditis elegans microsomal
           triglyceride transferprotein protein.
          Length = 892

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 161 TIAYPQQLPLISQVTSNVRTHGPQYYSN 244
           T+     +P + ++  N+R HGP YY N
Sbjct: 13  TVGVCLAVPDLDEIKKNLRKHGPDYYKN 40


>AF045645-4|AAC02607.3|  892|Caenorhabditis elegans Defecation
           suppressor of clk-1protein 4 protein.
          Length = 892

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 161 TIAYPQQLPLISQVTSNVRTHGPQYYSN 244
           T+     +P + ++  N+R HGP YY N
Sbjct: 13  TVGVCLAVPDLDEIKKNLRKHGPDYYKN 40


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 161 TIAYPQQLPLISQVTSNVRTHGPQYYSNSLPVPQQEEIVQERKFAEKPNA 310
           ++A  QQ+P+I Q   N      Q      P  Q + IVQ+ + A+K  A
Sbjct: 13  SVAGQQQVPVIQQAPPNSPAQQQQQAQAHAPPAQAKPIVQQTQPAQKQQA 62


>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 149 TILQTIAYPQQLPLISQVTSNVRTHGPQYYSNS 247
           T+L+ +  PQ LP     TS+   H PQY+SN+
Sbjct: 325 TVLKNVPMPQVLP----TTSSSFDHHPQYHSNT 353


>Z32682-6|CAA83614.1|  200|Caenorhabditis elegans Hypothetical
           protein M04D8.6 protein.
          Length = 200

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 230 QYYSNSLPVPQQEEIVQERKFAEK-PNALKKVA 325
           QY+ N +P P+Q++I  E    EK PN +K VA
Sbjct: 170 QYFDNQMPEPEQKKI--EEPIPEKNPNDIKIVA 200


>Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical
           protein C34B7.1 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 662 CHGGDLVGIFCTEYRRQNDSQYTPALVKIHC 570
           C GG   G FCT  R +N    T + VK  C
Sbjct: 332 CSGGTCQGRFCTFVRSKNQLDPTKSTVKKSC 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,640,105
Number of Sequences: 27780
Number of extensions: 383582
Number of successful extensions: 1250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)