Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1642
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    27   1.5  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.6  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   3.5  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    26   3.5  

>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 76  FISIYILSLSHTSNNDNEINTQTSSIGVDL 165
           F+++++L ++  S +DN   +  + IG+DL
Sbjct: 13  FVALFLLPMAFASGDDNSTESYGTVIGIDL 42


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 55   RKQTWRNFISIYILSLSHTSNNDNEIN 135
            RKQ WRN     + S+  TS+N  E+N
Sbjct: 1038 RKQRWRNRWESLLKSVRGTSDNTAEVN 1064


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 370 IYCVRILYIKTDILTEFKNLVSSGPQTNVPHIHNMIMMNQSI 245
           +Y   + ++KT     F+N+++   +T V  I N I   QS+
Sbjct: 816 VYFTDLTFLKTGNKDNFQNMINFDKRTKVTRILNEIKKFQSV 857


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 19  NETSKPSFQIKVRKQTWRNFISIYILSLSHTSNNDNEINT 138
           +E+SKP++      Q      SI I  +SH+ N +NE++T
Sbjct: 67  SESSKPAYCFNSHSQNMAEG-SISIPVISHSMNVENEVST 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,652
Number of Sequences: 5004
Number of extensions: 44517
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)