Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1642
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0394 - 16632559-16633020,16633156-16633761,16634580-16634690     30   1.2  
08_02_0773 + 21043553-21043813,21044775-21045203                       28   4.7  
11_06_0171 + 20875928-20876554                                         27   8.2  

>08_02_0394 - 16632559-16633020,16633156-16633761,16634580-16634690
          Length = 392

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 218 LGKVGGKCRNRLIHHYHIMDVWHICLRARRNEVFK 322
           + + GG+C   LIH    + V H+C R+R ++V+K
Sbjct: 331 ISRFGGRCLGNLIHGMSWVCVGHLC-RSRDSQVYK 364


>08_02_0773 + 21043553-21043813,21044775-21045203
          Length = 229

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 418 P*RVGELTGSNRKHWPTLALAS 483
           P +V +L GS R  WPTLA  S
Sbjct: 85  PSKVSDLLGSMRSEWPTLACPS 106


>11_06_0171 + 20875928-20876554
          Length = 208

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 392 SPEWLFQLHPNV*VSSRARTGSIG 463
           SP +LF + PN  VS++   GS+G
Sbjct: 185 SPRYLFNIRPNTLVSTKVLFGSMG 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,746,088
Number of Sequences: 37544
Number of extensions: 255581
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)