Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1641
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 97 2e-21
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 36 0.003
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch... 28 0.69
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 3.7
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 25 4.8
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 25 4.8
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 25 4.8
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 4.8
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 25 6.4
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 6.4
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 6.4
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo... 25 6.4
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 6.4
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 25 8.4
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 8.4
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 25 8.4
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 25 8.4
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 8.4
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 96.7 bits (230), Expect = 2e-21
Identities = 53/142 (37%), Positives = 80/142 (56%)
Frame = +2
Query: 68 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 247
SGV VS C ++E+K K RYVVF + D K V + +++ FL DL +
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEK--- 60
Query: 248 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTVKVKKKMLYSSSFDALKKSLVGVQ 427
+CRY ++DFE+ + +G + K+ +SW PD +K KM+YSSS D L+++ G+
Sbjct: 61 DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIG 114
Query: 428 KYMQATDLSEAFQEAVLREASR 493
+QATD SE E VL + +R
Sbjct: 115 TDIQATDFSEVAYETVLEKVTR 136
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 36.3 bits (80), Expect = 0.003
Identities = 27/86 (31%), Positives = 43/86 (50%)
Frame = +2
Query: 134 RYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEAS 313
R + I +E DV+T+ E++ E D +K EC G + + + S
Sbjct: 26 RAAIISISNENSFDVKTMVEKSESIES---DFKK--VRECLLGSEEPAFVL----VYDDS 76
Query: 314 KKQKLFLMSWCPDTVKVKKKMLYSSS 391
KK L L+S+ P+ V++KMLY+SS
Sbjct: 77 KKNLLQLISYVPENANVRRKMLYASS 102
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +2
Query: 323 KLFLMSWCPDTVKVKKKMLYSSS----FDALKKSL-VGVQKYMQATDLSEAFQEAVLREA 487
K+ + CP VK +M+YSSS D++K L + + +++ D ++ ++ +L A
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEILHAA 303
>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 298
Score = 28.3 bits (60), Expect = 0.69
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = +2
Query: 209 EQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTVK--VKKKMLY 382
E F+ +G C YG YT+ Q S +L+ W VK V+ LY
Sbjct: 45 EYFMSTTSTIASGHCEYGTKGITYTNHLQFILTIS-----YLVHWDLSQVKPLVENNRLY 99
Query: 383 SSSFDALKKSLVGVQKYMQATDLSEAFQEAVLREASRH 496
DAL + + Y+ + L +FQ+ V+R H
Sbjct: 100 QQRADALAQENL---SYVY-SPLFHSFQDWVVRSLLYH 133
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = -2
Query: 342 HDIRKSFCFLLASDVPWHWCVYSKSNRPY-----LHSPVPPFCR 226
HD+ +++ S +H C ++S P+ LH+P+P C+
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQ 150
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 1 CRCRGVGEVSGVIFT*ITSKNGV 69
CRC G+ ++SG I + SKNG+
Sbjct: 330 CRCAGIKDISGEI---LGSKNGM 349
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 409 LFQSVERAR-VQHLLLDLDGVRAPRHQE 329
LF E AR V++LLL L+G++A RH +
Sbjct: 460 LFNLFEVAREVKNLLLLLEGLKAQRHNK 487
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +2
Query: 95 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDF 274
K + + ++ + K ++ +D K+ D + + + EY F ++L+ TG+ Y DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166
Query: 275 E 277
+
Sbjct: 167 Q 167
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 294 WHWCVYSKSNRPY--LHSPVPPFCRSSRNCSYSALRSPTVSTSICF 163
W++ Y+ S R Y VPP+CR +R+ + CF
Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 389 SFDALKKSLVGVQKYMQATDLS 454
S +AL++ L G + Y+Q+TD++
Sbjct: 188 SLEALQEELEGFEDYVQSTDIA 209
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 6.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 77 TVSDACKTTYEEIKKDKKHRYV 142
TV D C + IK KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 6.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 74 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 178
VT D KT + +K KH+ V YIR K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146
>SPAC17H9.11 |||cofilin/tropomyosin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 25.0 bits (52), Expect = 6.4
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 299 TSEASKKQKLFLMSWCPDTVKVKKKMLYSSSFDALKKSLVGVQKYMQATDLSEAFQEAV 475
T++ LF++ W P M+Y+S+ + + V K +A D + EAV
Sbjct: 79 TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAV 136
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 6.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 272 FEYTHQCQGTSEASKK-QKLFLMSWCPDTVKVKKKMLYSSSFDALKK 409
F+ H +G +++K+ ++L L++W + KK + YSS L K
Sbjct: 783 FQDLHPKEGRLKSAKQVEELCLVTWADALLIQKKSLTYSSFLAFLVK 829
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 155 RDEKQIDVETVGERNAEYEQFLEDLQKGGT 244
RD+KQ DVE + E +A+ + + GG+
Sbjct: 277 RDQKQQDVEALQEYSAKLSLERDKISSGGS 306
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 95 KTTYEEIKKDKKH-RYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQK 235
K TY + KK ++ R ++ + + + + + +YE FL++L++
Sbjct: 399 KKTYPQTKKKNRNWRLKTIGMQKAEDVKKQDIERQERDYELFLQNLEE 446
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -2
Query: 279 YSKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVSTS 172
Y+KS + ++ S P C + ++ S S++ T +T+
Sbjct: 289 YAKSQKKWIQSRFLPMCLAQQDLSPSSILFSTTNTT 324
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 475 NGLLKRFREVGRLHVLLNSDKGLFQSVERARVQHLLLD 362
NG +K + + + H LL++ K + + ++HLLL+
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 303 DVPWHWCVYSKSNRPYLHSPVPPFCRSSRNCSY 205
D+P WC Y +++P+L + F RS +C +
Sbjct: 687 DLPPGWCEYCLAHQPFL---LRSFIRSLPDCLF 716
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,773,430
Number of Sequences: 5004
Number of extensions: 31743
Number of successful extensions: 122
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -