Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1641
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.      104   4e-23
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...   104   4e-23
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       75   4e-14
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    75   4e-14
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    74   5e-14
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    29   1.4  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical ...    29   2.5  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score =  104 bits (249), Expect = 4e-23
 Identities = 56/143 (39%), Positives = 88/143 (61%), Gaps = 5/143 (3%)
 Frame = +2

Query: 62  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 235
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 236 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTVKVKKKMLYSSSFDALKKS 412
                ECRY   D E T Q QG    S   K+  + +CPD   V+++MLY+SS  ALK S
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120

Query: 413 LVGVQK--YMQATDLSEAFQEAV 475
           L G++    +QA+++S+  +++V
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSV 142


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score =  104 bits (249), Expect = 4e-23
 Identities = 56/143 (39%), Positives = 88/143 (61%), Gaps = 5/143 (3%)
 Frame = +2

Query: 62  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 235
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 236 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTVKVKKKMLYSSSFDALKKS 412
                ECRY   D E T Q QG    S   K+  + +CPD   V+++MLY+SS  ALK S
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120

Query: 413 LVGVQK--YMQATDLSEAFQEAV 475
           L G++    +QA+++S+  +++V
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSV 142


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 18/159 (11%)
 Frame = +2

Query: 62  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 199
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 200 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTVKVKK 370
            A +++F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD   +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 371 KMLYSSSFDALKKSL-VGVQKYMQATDLSEAFQEAVLRE 484
           KM+Y+SS  A+K SL  G     Q +D SE   + +L +
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNK 157


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 18/159 (11%)
 Frame = +2

Query: 62  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 199
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 200 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTVKVKK 370
            A +++F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD   +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 371 KMLYSSSFDALKKSL-VGVQKYMQATDLSEAFQEAVLRE 484
           KM+Y+SS  A+K SL  G     Q +D SE   + +L +
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNK 157


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 18/157 (11%)
 Frame = +2

Query: 62  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 199
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 200 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTVKVKK 370
            A +++F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD   +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 371 KMLYSSSFDALKKSL-VGVQKYMQATDLSEAFQEAVL 478
           KM+Y+SS  A+K SL  G     Q +D SE   + +L
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELL 155



 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
 Frame = +2

Query: 287 QCQGTSEASKKQKLFLMSWCPDTVKVKKKMLYSSSFDALKKSLVGVQK--YMQATDLSEA 460
           Q    SE S K+   L++ CPD   V+++MLY+SS  ALK SL G++    +QA+++S+ 
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197

Query: 461 FQEAV 475
            +++V
Sbjct: 198 DEKSV 202


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 276 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 175
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 276 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 175
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48G1A.3 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 278 YTHQCQGTSEASKKQKLFLMSWCPDTVKVKKKMLY 382
           + H   G+ E    + +F  S  PD++K KKK+LY
Sbjct: 161 FIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,117,469
Number of Sequences: 27780
Number of extensions: 190137
Number of successful extensions: 721
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)