Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1638
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   4.2  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.6  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    25   9.8  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   9.8  
SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.8  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 146 CTIFLWIYILHFFITNVMGIY 208
           C I LW  I HF I    G+Y
Sbjct: 125 CWICLWSMIFHFIIAIANGVY 145


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 92  HFSVLYIF*INLRNLICKCTIF 157
           H S  Y F +N+R L+C  TIF
Sbjct: 126 HTSFFYAF-LNIRTLVCGITIF 146


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 184 YYKRNGYLRIYC 219
           +YK +GY+++YC
Sbjct: 408 FYKEDGYVKVYC 419


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 191 NVMGIYVFTVFRNLCPG 241
           N+MGI V+ +  N CPG
Sbjct: 264 NIMGITVYVLDANHCPG 280


>SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 144

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -1

Query: 190 CNKKM*NVNPQKYRTFAYQISKINLKNVQYRKMAITNTLVNFSLKNVILCQFLYAYRVLG 11
           CN KM     Q +R F  +I   N    +Y    + N L    +  +++C   Y  ++LG
Sbjct: 70  CNHKM-----QAWR-FPNEIEAFNDDGEEYSGQKLLNVLRKEDVYGMVVCVRWYGGQLLG 123

Query: 10  P 8
           P
Sbjct: 124 P 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,150
Number of Sequences: 5004
Number of extensions: 44461
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)